Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 154106 | 0.67 | 0.961159 |
Target: 5'- -----aUCGAGGuCGuCGccuucggacccgauaACGAGGCCGAg -3' miRNA: 3'- gacaaaAGCUCC-GC-GC---------------UGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 30997 | 0.66 | 0.977158 |
Target: 5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3' miRNA: 3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 127481 | 0.66 | 0.963168 |
Target: 5'- -gGUggUCG-GGCGCGGCGGGaGCg-- -3' miRNA: 3'- gaCAaaAGCuCCGCGCUGCUC-CGgcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 130183 | 0.66 | 0.963168 |
Target: 5'- -----aUCGGGGCGCaGACGcugaaacgccuGGCCGGc -3' miRNA: 3'- gacaaaAGCUCCGCG-CUGCu----------CCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 38159 | 0.66 | 0.966044 |
Target: 5'- aCUGguaUCGGGGCGCcaucgcGGCGAuagucgcGGCCGu -3' miRNA: 3'- -GACaaaAGCUCCGCG------CUGCU-------CCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 102013 | 0.66 | 0.966354 |
Target: 5'- -aGg--UCGuaguuGGCGCGGCG-GGCCa- -3' miRNA: 3'- gaCaaaAGCu----CCGCGCUGCuCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 147252 | 0.66 | 0.969339 |
Target: 5'- gUGUUguaUGAuGGUGCGACGGGGUUa- -3' miRNA: 3'- gACAAaa-GCU-CCGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 143061 | 0.66 | 0.972132 |
Target: 5'- uCUGgg--CGAGGgGCGcuuCGGGGgCGAc -3' miRNA: 3'- -GACaaaaGCUCCgCGCu--GCUCCgGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 143294 | 0.66 | 0.974735 |
Target: 5'- ------cCGAGGCgGCGuCgGGGGCCGGg -3' miRNA: 3'- gacaaaaGCUCCG-CGCuG-CUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 131760 | 0.66 | 0.977158 |
Target: 5'- ------gCGAGGCGCG-CGcccaGGGCCGc -3' miRNA: 3'- gacaaaaGCUCCGCGCuGC----UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 168177 | 0.66 | 0.977158 |
Target: 5'- ------gCGGGGCGCGACaGcGGCgCGAc -3' miRNA: 3'- gacaaaaGCUCCGCGCUG-CuCCG-GCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 74139 | 0.66 | 0.963168 |
Target: 5'- -----gUCGAGGCGgGugccCG-GGCCGAg -3' miRNA: 3'- gacaaaAGCUCCGCgCu---GCuCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 89349 | 0.66 | 0.969339 |
Target: 5'- -----cUCGAGGCaCGAC-AGGCCGc -3' miRNA: 3'- gacaaaAGCUCCGcGCUGcUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 167582 | 0.66 | 0.969339 |
Target: 5'- uUGUUgUCGAcgucugaugugGGUGCuGGCGGGGCUGu -3' miRNA: 3'- gACAAaAGCU-----------CCGCG-CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 103290 | 0.66 | 0.972132 |
Target: 5'- -gGUUcUUCGAGGCccGCGGCGgcAGGCUc- -3' miRNA: 3'- gaCAA-AAGCUCCG--CGCUGC--UCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 201699 | 0.66 | 0.972132 |
Target: 5'- ---cUUUCGAGacGCGUaucgGAUGAGGCCGu -3' miRNA: 3'- gacaAAAGCUC--CGCG----CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 176791 | 0.66 | 0.974735 |
Target: 5'- -gGUUUgaggCGAGGCGCGuGCGccAGaCCGAu -3' miRNA: 3'- gaCAAAa---GCUCCGCGC-UGC--UCcGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 24681 | 0.66 | 0.974735 |
Target: 5'- -----aUCgGAGGCGaCGACGcuGCCGAu -3' miRNA: 3'- gacaaaAG-CUCCGC-GCUGCucCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 226124 | 0.66 | 0.977158 |
Target: 5'- -aGg---CGGGGgucgcCGCGugGAGGCUGGc -3' miRNA: 3'- gaCaaaaGCUCC-----GCGCugCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 140139 | 0.66 | 0.977158 |
Target: 5'- uUGgugUUCGGGGC-CGACGAuGGCg-- -3' miRNA: 3'- gACaa-AAGCUCCGcGCUGCU-CCGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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