miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 3' -55.3 NC_004065.1 + 141708 0.97 0.032798
Target:  5'- uCUGUUUUC-AGGCGCGACGAGGCCGAg -3'
miRNA:   3'- -GACAAAAGcUCCGCGCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 197470 0.79 0.37594
Target:  5'- aUGUUUgUCGGcggauaccgccGGCGCGACGGGGCCGu -3'
miRNA:   3'- gACAAA-AGCU-----------CCGCGCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 173984 0.74 0.64391
Target:  5'- ------cUGGGGCGCGAacccucCGAGGCCGAg -3'
miRNA:   3'- gacaaaaGCUCCGCGCU------GCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 133619 0.72 0.741547
Target:  5'- ---aUUUCGAGGCGgaCGACGAGgaguucGCCGAg -3'
miRNA:   3'- gacaAAAGCUCCGC--GCUGCUC------CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 46720 0.72 0.76946
Target:  5'- cCUGUUccgCGAGGuCGCGcACGAGGCg-- -3'
miRNA:   3'- -GACAAaa-GCUCC-GCGC-UGCUCCGgcu -5'
15766 3' -55.3 NC_004065.1 + 146606 0.72 0.778544
Target:  5'- -----aUCGGGGcCGuCGGCGGGGCCGu -3'
miRNA:   3'- gacaaaAGCUCC-GC-GCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 128375 0.72 0.778544
Target:  5'- -----aUCGGGGCuucgGCGGCGAGaGCCGGc -3'
miRNA:   3'- gacaaaAGCUCCG----CGCUGCUC-CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 179458 0.71 0.805022
Target:  5'- -gGUgcUCGAGGaugggaGCGugGGGGCCa- -3'
miRNA:   3'- gaCAaaAGCUCCg-----CGCugCUCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 206824 0.71 0.813564
Target:  5'- gCUGcgaaUUCG-GGCGggauCGGCGGGGCCGAc -3'
miRNA:   3'- -GACaa--AAGCuCCGC----GCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 104600 0.71 0.821949
Target:  5'- cCUGcc--CGAGGCGCuGGCGccGGCCGAc -3'
miRNA:   3'- -GACaaaaGCUCCGCG-CUGCu-CCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 143106 0.7 0.861295
Target:  5'- -cGUUUUCGAcGCGCG-CGccGCCGAg -3'
miRNA:   3'- gaCAAAAGCUcCGCGCuGCucCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 73949 0.7 0.868603
Target:  5'- uCUGgcagcCGAgacaGGCGuCGGCGAGGUCGAg -3'
miRNA:   3'- -GACaaaa-GCU----CCGC-GCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 62361 0.7 0.868603
Target:  5'- -gGUUUUCGAcGGCggugGCGGCGGGGgUGGu -3'
miRNA:   3'- gaCAAAAGCU-CCG----CGCUGCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 130188 0.69 0.87571
Target:  5'- -----aUCu-GGUGCGACGGGGCCGu -3'
miRNA:   3'- gacaaaAGcuCCGCGCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 173299 0.69 0.87571
Target:  5'- -gGUUcuucUUCGAGGUgucggucgGCGACGAGGgUGAg -3'
miRNA:   3'- gaCAA----AAGCUCCG--------CGCUGCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 146734 0.69 0.882612
Target:  5'- ------aCGAGGCaGCGgucggccgccGCGAGGCCGGu -3'
miRNA:   3'- gacaaaaGCUCCG-CGC----------UGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 157116 0.69 0.882612
Target:  5'- -------gGAGGCGCGAcucgcgaaCGAGGUCGAg -3'
miRNA:   3'- gacaaaagCUCCGCGCU--------GCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 22476 0.69 0.889303
Target:  5'- gUGUUUcUC-AGGCGCGACGAcGCgGAg -3'
miRNA:   3'- gACAAA-AGcUCCGCGCUGCUcCGgCU- -5'
15766 3' -55.3 NC_004065.1 + 130008 0.69 0.908083
Target:  5'- ------cCGAGGCaGCGACGAG-CCGGc -3'
miRNA:   3'- gacaaaaGCUCCG-CGCUGCUCcGGCU- -5'
15766 3' -55.3 NC_004065.1 + 25003 0.68 0.913902
Target:  5'- gUGUgggCGuccguGGGCGCGGCaaGGGGCCGu -3'
miRNA:   3'- gACAaaaGC-----UCCGCGCUG--CUCCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.