Results 21 - 40 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 207698 | 0.68 | 0.919497 |
Target: 5'- uUGgccUCGucGUGCGACGGGGUCGu -3' miRNA: 3'- gACaaaAGCucCGCGCUGCUCCGGCu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 177486 | 0.68 | 0.924867 |
Target: 5'- -------gGGGGCGCacGGCGGGGCCGc -3' miRNA: 3'- gacaaaagCUCCGCG--CUGCUCCGGCu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 103744 | 0.68 | 0.924867 |
Target: 5'- -cGgcgUCGGuucGCGCGGCGGGGCCu- -3' miRNA: 3'- gaCaaaAGCUc--CGCGCUGCUCCGGcu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 188246 | 0.68 | 0.924867 |
Target: 5'- -gGUUgugUCGAGGCG-GAC-AGGUCGGc -3' miRNA: 3'- gaCAAa--AGCUCCGCgCUGcUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 17622 | 0.68 | 0.924867 |
Target: 5'- uUGUggUCGcGGCGCGucuuGCGAGGaaGAu -3' miRNA: 3'- gACAaaAGCuCCGCGC----UGCUCCggCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 202278 | 0.68 | 0.924867 |
Target: 5'- -----cUCGAuGCGCGGCGGGGUCa- -3' miRNA: 3'- gacaaaAGCUcCGCGCUGCUCCGGcu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 210130 | 0.68 | 0.934929 |
Target: 5'- -cGUcUUCGAuuccucGGCgGCGACGGGGUgGAu -3' miRNA: 3'- gaCAaAAGCU------CCG-CGCUGCUCCGgCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 4370 | 0.68 | 0.934929 |
Target: 5'- gUGgagcgCGAcGGCgGCGGCGGGaGCCGGa -3' miRNA: 3'- gACaaaa-GCU-CCG-CGCUGCUC-CGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 18033 | 0.68 | 0.934929 |
Target: 5'- uCUGguucgUCG-GGCuGCG-CGAGGUCGAg -3' miRNA: 3'- -GACaaa--AGCuCCG-CGCuGCUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 96570 | 0.67 | 0.939622 |
Target: 5'- -cGUgacCGAGGCG-GAacaaucgcagaaCGAGGCCGAc -3' miRNA: 3'- gaCAaaaGCUCCGCgCU------------GCUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 96070 | 0.67 | 0.939622 |
Target: 5'- -----aUCGAcGGCGCGuuCG-GGCCGAu -3' miRNA: 3'- gacaaaAGCU-CCGCGCu-GCuCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 46163 | 0.67 | 0.951975 |
Target: 5'- uUGcgUUCGGccacGGCcaaacacgcgacgGCGugGGGGCCGAa -3' miRNA: 3'- gACaaAAGCU----CCG-------------CGCugCUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 60047 | 0.67 | 0.951975 |
Target: 5'- -aGUUUcUCGAGGaacuccuuggucaUGCGACGcGGGCCGc -3' miRNA: 3'- gaCAAA-AGCUCC-------------GCGCUGC-UCCGGCu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 7368 | 0.67 | 0.952368 |
Target: 5'- aCUGUcggacgUGGGGCGCuGACGcGGGCCc- -3' miRNA: 3'- -GACAaaa---GCUCCGCG-CUGC-UCCGGcu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 50595 | 0.67 | 0.953919 |
Target: 5'- aCUGUcUUCG-GGCGCcggccucuuccucggGACGgAGGCCa- -3' miRNA: 3'- -GACAaAAGCuCCGCG---------------CUGC-UCCGGcu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 111764 | 0.67 | 0.95618 |
Target: 5'- -aGUacgUCGAGGCGcCGGCGAGcuccacgcguccGUCGAc -3' miRNA: 3'- gaCAaa-AGCUCCGC-GCUGCUC------------CGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 66126 | 0.67 | 0.95618 |
Target: 5'- ------cCGAGGCGCuGGCGcgcuGGGCCGc -3' miRNA: 3'- gacaaaaGCUCCGCG-CUGC----UCCGGCu -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 78028 | 0.67 | 0.959428 |
Target: 5'- -----aUCGAuGGCGUgcgccgggucccuGAUGAGGCCGGc -3' miRNA: 3'- gacaaaAGCU-CCGCG-------------CUGCUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 68806 | 0.67 | 0.959778 |
Target: 5'- -cGUg--CG-GGCGCugcGCGAGGUCGAg -3' miRNA: 3'- gaCAaaaGCuCCGCGc--UGCUCCGGCU- -5' |
|||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 141436 | 0.67 | 0.959778 |
Target: 5'- -----aUgGAGGgcCGCGACGAGGgCGAc -3' miRNA: 3'- gacaaaAgCUCC--GCGCUGCUCCgGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home