miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 3' -55.3 NC_004065.1 + 4370 0.68 0.934929
Target:  5'- gUGgagcgCGAcGGCgGCGGCGGGaGCCGGa -3'
miRNA:   3'- gACaaaa-GCU-CCG-CGCUGCUC-CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 7368 0.67 0.952368
Target:  5'- aCUGUcggacgUGGGGCGCuGACGcGGGCCc- -3'
miRNA:   3'- -GACAaaa---GCUCCGCG-CUGC-UCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 17622 0.68 0.924867
Target:  5'- uUGUggUCGcGGCGCGucuuGCGAGGaaGAu -3'
miRNA:   3'- gACAaaAGCuCCGCGC----UGCUCCggCU- -5'
15766 3' -55.3 NC_004065.1 + 18033 0.68 0.934929
Target:  5'- uCUGguucgUCG-GGCuGCG-CGAGGUCGAg -3'
miRNA:   3'- -GACaaa--AGCuCCG-CGCuGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 22476 0.69 0.889303
Target:  5'- gUGUUUcUC-AGGCGCGACGAcGCgGAg -3'
miRNA:   3'- gACAAA-AGcUCCGCGCUGCUcCGgCU- -5'
15766 3' -55.3 NC_004065.1 + 24681 0.66 0.974735
Target:  5'- -----aUCgGAGGCGaCGACGcuGCCGAu -3'
miRNA:   3'- gacaaaAG-CUCCGC-GCUGCucCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 25003 0.68 0.913902
Target:  5'- gUGUgggCGuccguGGGCGCGGCaaGGGGCCGu -3'
miRNA:   3'- gACAaaaGC-----UCCGCGCUG--CUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 30997 0.66 0.977158
Target:  5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3'
miRNA:   3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 38159 0.66 0.966044
Target:  5'- aCUGguaUCGGGGCGCcaucgcGGCGAuagucgcGGCCGu -3'
miRNA:   3'- -GACaaaAGCUCCGCG------CUGCU-------CCGGCu -5'
15766 3' -55.3 NC_004065.1 + 46163 0.67 0.951975
Target:  5'- uUGcgUUCGGccacGGCcaaacacgcgacgGCGugGGGGCCGAa -3'
miRNA:   3'- gACaaAAGCU----CCG-------------CGCugCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 46720 0.72 0.76946
Target:  5'- cCUGUUccgCGAGGuCGCGcACGAGGCg-- -3'
miRNA:   3'- -GACAAaa-GCUCC-GCGC-UGCUCCGgcu -5'
15766 3' -55.3 NC_004065.1 + 50595 0.67 0.953919
Target:  5'- aCUGUcUUCG-GGCGCcggccucuuccucggGACGgAGGCCa- -3'
miRNA:   3'- -GACAaAAGCuCCGCG---------------CUGC-UCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 60047 0.67 0.951975
Target:  5'- -aGUUUcUCGAGGaacuccuuggucaUGCGACGcGGGCCGc -3'
miRNA:   3'- gaCAAA-AGCUCC-------------GCGCUGC-UCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 62361 0.7 0.868603
Target:  5'- -gGUUUUCGAcGGCggugGCGGCGGGGgUGGu -3'
miRNA:   3'- gaCAAAAGCU-CCG----CGCUGCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 66126 0.67 0.95618
Target:  5'- ------cCGAGGCGCuGGCGcgcuGGGCCGc -3'
miRNA:   3'- gacaaaaGCUCCGCG-CUGC----UCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 68806 0.67 0.959778
Target:  5'- -cGUg--CG-GGCGCugcGCGAGGUCGAg -3'
miRNA:   3'- gaCAaaaGCuCCGCGc--UGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 73949 0.7 0.868603
Target:  5'- uCUGgcagcCGAgacaGGCGuCGGCGAGGUCGAg -3'
miRNA:   3'- -GACaaaa-GCU----CCGC-GCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 74139 0.66 0.963168
Target:  5'- -----gUCGAGGCGgGugccCG-GGCCGAg -3'
miRNA:   3'- gacaaaAGCUCCGCgCu---GCuCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 78028 0.67 0.959428
Target:  5'- -----aUCGAuGGCGUgcgccgggucccuGAUGAGGCCGGc -3'
miRNA:   3'- gacaaaAGCU-CCGCG-------------CUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 89349 0.66 0.969339
Target:  5'- -----cUCGAGGCaCGAC-AGGCCGc -3'
miRNA:   3'- gacaaaAGCUCCGcGCUGcUCCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.