Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 143106 | 0.7 | 0.861295 |
Target: 5'- -cGUUUUCGAcGCGCG-CGccGCCGAg -3' miRNA: 3'- gaCAAAAGCUcCGCGCuGCucCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 143294 | 0.66 | 0.974735 |
Target: 5'- ------cCGAGGCgGCGuCgGGGGCCGGg -3' miRNA: 3'- gacaaaaGCUCCG-CGCuG-CUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 146606 | 0.72 | 0.778544 |
Target: 5'- -----aUCGGGGcCGuCGGCGGGGCCGu -3' miRNA: 3'- gacaaaAGCUCC-GC-GCUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 146734 | 0.69 | 0.882612 |
Target: 5'- ------aCGAGGCaGCGgucggccgccGCGAGGCCGGu -3' miRNA: 3'- gacaaaaGCUCCG-CGC----------UGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 147252 | 0.66 | 0.969339 |
Target: 5'- gUGUUguaUGAuGGUGCGACGGGGUUa- -3' miRNA: 3'- gACAAaa-GCU-CCGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 154106 | 0.67 | 0.961159 |
Target: 5'- -----aUCGAGGuCGuCGccuucggacccgauaACGAGGCCGAg -3' miRNA: 3'- gacaaaAGCUCC-GC-GC---------------UGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 157116 | 0.69 | 0.882612 |
Target: 5'- -------gGAGGCGCGAcucgcgaaCGAGGUCGAg -3' miRNA: 3'- gacaaaagCUCCGCGCU--------GCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 167582 | 0.66 | 0.969339 |
Target: 5'- uUGUUgUCGAcgucugaugugGGUGCuGGCGGGGCUGu -3' miRNA: 3'- gACAAaAGCU-----------CCGCG-CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 168177 | 0.66 | 0.977158 |
Target: 5'- ------gCGGGGCGCGACaGcGGCgCGAc -3' miRNA: 3'- gacaaaaGCUCCGCGCUG-CuCCG-GCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 173299 | 0.69 | 0.87571 |
Target: 5'- -gGUUcuucUUCGAGGUgucggucgGCGACGAGGgUGAg -3' miRNA: 3'- gaCAA----AAGCUCCG--------CGCUGCUCCgGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 173984 | 0.74 | 0.64391 |
Target: 5'- ------cUGGGGCGCGAacccucCGAGGCCGAg -3' miRNA: 3'- gacaaaaGCUCCGCGCU------GCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 176791 | 0.66 | 0.974735 |
Target: 5'- -gGUUUgaggCGAGGCGCGuGCGccAGaCCGAu -3' miRNA: 3'- gaCAAAa---GCUCCGCGC-UGC--UCcGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 177486 | 0.68 | 0.924867 |
Target: 5'- -------gGGGGCGCacGGCGGGGCCGc -3' miRNA: 3'- gacaaaagCUCCGCG--CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 179458 | 0.71 | 0.805022 |
Target: 5'- -gGUgcUCGAGGaugggaGCGugGGGGCCa- -3' miRNA: 3'- gaCAaaAGCUCCg-----CGCugCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 188246 | 0.68 | 0.924867 |
Target: 5'- -gGUUgugUCGAGGCG-GAC-AGGUCGGc -3' miRNA: 3'- gaCAAa--AGCUCCGCgCUGcUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 197470 | 0.79 | 0.37594 |
Target: 5'- aUGUUUgUCGGcggauaccgccGGCGCGACGGGGCCGu -3' miRNA: 3'- gACAAA-AGCU-----------CCGCGCUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 201699 | 0.66 | 0.972132 |
Target: 5'- ---cUUUCGAGacGCGUaucgGAUGAGGCCGu -3' miRNA: 3'- gacaAAAGCUC--CGCG----CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 202278 | 0.68 | 0.924867 |
Target: 5'- -----cUCGAuGCGCGGCGGGGUCa- -3' miRNA: 3'- gacaaaAGCUcCGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 206824 | 0.71 | 0.813564 |
Target: 5'- gCUGcgaaUUCG-GGCGggauCGGCGGGGCCGAc -3' miRNA: 3'- -GACaa--AAGCuCCGC----GCUGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 207698 | 0.68 | 0.919497 |
Target: 5'- uUGgccUCGucGUGCGACGGGGUCGu -3' miRNA: 3'- gACaaaAGCucCGCGCUGCUCCGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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