miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 3' -55.3 NC_004065.1 + 143294 0.66 0.974735
Target:  5'- ------cCGAGGCgGCGuCgGGGGCCGGg -3'
miRNA:   3'- gacaaaaGCUCCG-CGCuG-CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 143106 0.7 0.861295
Target:  5'- -cGUUUUCGAcGCGCG-CGccGCCGAg -3'
miRNA:   3'- gaCAAAAGCUcCGCGCuGCucCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 143061 0.66 0.972132
Target:  5'- uCUGgg--CGAGGgGCGcuuCGGGGgCGAc -3'
miRNA:   3'- -GACaaaaGCUCCgCGCu--GCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 141708 0.97 0.032798
Target:  5'- uCUGUUUUC-AGGCGCGACGAGGCCGAg -3'
miRNA:   3'- -GACAAAAGcUCCGCGCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 141436 0.67 0.959778
Target:  5'- -----aUgGAGGgcCGCGACGAGGgCGAc -3'
miRNA:   3'- gacaaaAgCUCC--GCGCUGCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 140139 0.66 0.977158
Target:  5'- uUGgugUUCGGGGC-CGACGAuGGCg-- -3'
miRNA:   3'- gACaa-AAGCUCCGcGCUGCU-CCGgcu -5'
15766 3' -55.3 NC_004065.1 + 133619 0.72 0.741547
Target:  5'- ---aUUUCGAGGCGgaCGACGAGgaguucGCCGAg -3'
miRNA:   3'- gacaAAAGCUCCGC--GCUGCUC------CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 131760 0.66 0.977158
Target:  5'- ------gCGAGGCGCG-CGcccaGGGCCGc -3'
miRNA:   3'- gacaaaaGCUCCGCGCuGC----UCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 130188 0.69 0.87571
Target:  5'- -----aUCu-GGUGCGACGGGGCCGu -3'
miRNA:   3'- gacaaaAGcuCCGCGCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 130183 0.66 0.963168
Target:  5'- -----aUCGGGGCGCaGACGcugaaacgccuGGCCGGc -3'
miRNA:   3'- gacaaaAGCUCCGCG-CUGCu----------CCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 130008 0.69 0.908083
Target:  5'- ------cCGAGGCaGCGACGAG-CCGGc -3'
miRNA:   3'- gacaaaaGCUCCG-CGCUGCUCcGGCU- -5'
15766 3' -55.3 NC_004065.1 + 128375 0.72 0.778544
Target:  5'- -----aUCGGGGCuucgGCGGCGAGaGCCGGc -3'
miRNA:   3'- gacaaaAGCUCCG----CGCUGCUC-CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 127481 0.66 0.963168
Target:  5'- -gGUggUCG-GGCGCGGCGGGaGCg-- -3'
miRNA:   3'- gaCAaaAGCuCCGCGCUGCUC-CGgcu -5'
15766 3' -55.3 NC_004065.1 + 127383 0.66 0.977158
Target:  5'- uUGUUccUCGAGGuCGCGACGccuuCCGAc -3'
miRNA:   3'- gACAAa-AGCUCC-GCGCUGCucc-GGCU- -5'
15766 3' -55.3 NC_004065.1 + 114863 0.66 0.963168
Target:  5'- -----gUCGGGGCGCGGCGc--CCGAc -3'
miRNA:   3'- gacaaaAGCUCCGCGCUGCuccGGCU- -5'
15766 3' -55.3 NC_004065.1 + 111764 0.67 0.95618
Target:  5'- -aGUacgUCGAGGCGcCGGCGAGcuccacgcguccGUCGAc -3'
miRNA:   3'- gaCAaa-AGCUCCGC-GCUGCUC------------CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 104600 0.71 0.821949
Target:  5'- cCUGcc--CGAGGCGCuGGCGccGGCCGAc -3'
miRNA:   3'- -GACaaaaGCUCCGCG-CUGCu-CCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 103744 0.68 0.924867
Target:  5'- -cGgcgUCGGuucGCGCGGCGGGGCCu- -3'
miRNA:   3'- gaCaaaAGCUc--CGCGCUGCUCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 103290 0.66 0.972132
Target:  5'- -gGUUcUUCGAGGCccGCGGCGgcAGGCUc- -3'
miRNA:   3'- gaCAA-AAGCUCCG--CGCUGC--UCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 102013 0.66 0.966354
Target:  5'- -aGg--UCGuaguuGGCGCGGCG-GGCCa- -3'
miRNA:   3'- gaCaaaAGCu----CCGCGCUGCuCCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.