Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 96570 | 0.67 | 0.939622 |
Target: 5'- -cGUgacCGAGGCG-GAacaaucgcagaaCGAGGCCGAc -3' miRNA: 3'- gaCAaaaGCUCCGCgCU------------GCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 96070 | 0.67 | 0.939622 |
Target: 5'- -----aUCGAcGGCGCGuuCG-GGCCGAu -3' miRNA: 3'- gacaaaAGCU-CCGCGCu-GCuCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 89349 | 0.66 | 0.969339 |
Target: 5'- -----cUCGAGGCaCGAC-AGGCCGc -3' miRNA: 3'- gacaaaAGCUCCGcGCUGcUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 78028 | 0.67 | 0.959428 |
Target: 5'- -----aUCGAuGGCGUgcgccgggucccuGAUGAGGCCGGc -3' miRNA: 3'- gacaaaAGCU-CCGCG-------------CUGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 74139 | 0.66 | 0.963168 |
Target: 5'- -----gUCGAGGCGgGugccCG-GGCCGAg -3' miRNA: 3'- gacaaaAGCUCCGCgCu---GCuCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 73949 | 0.7 | 0.868603 |
Target: 5'- uCUGgcagcCGAgacaGGCGuCGGCGAGGUCGAg -3' miRNA: 3'- -GACaaaa-GCU----CCGC-GCUGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 68806 | 0.67 | 0.959778 |
Target: 5'- -cGUg--CG-GGCGCugcGCGAGGUCGAg -3' miRNA: 3'- gaCAaaaGCuCCGCGc--UGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 66126 | 0.67 | 0.95618 |
Target: 5'- ------cCGAGGCGCuGGCGcgcuGGGCCGc -3' miRNA: 3'- gacaaaaGCUCCGCG-CUGC----UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 62361 | 0.7 | 0.868603 |
Target: 5'- -gGUUUUCGAcGGCggugGCGGCGGGGgUGGu -3' miRNA: 3'- gaCAAAAGCU-CCG----CGCUGCUCCgGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 60047 | 0.67 | 0.951975 |
Target: 5'- -aGUUUcUCGAGGaacuccuuggucaUGCGACGcGGGCCGc -3' miRNA: 3'- gaCAAA-AGCUCC-------------GCGCUGC-UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 50595 | 0.67 | 0.953919 |
Target: 5'- aCUGUcUUCG-GGCGCcggccucuuccucggGACGgAGGCCa- -3' miRNA: 3'- -GACAaAAGCuCCGCG---------------CUGC-UCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 46720 | 0.72 | 0.76946 |
Target: 5'- cCUGUUccgCGAGGuCGCGcACGAGGCg-- -3' miRNA: 3'- -GACAAaa-GCUCC-GCGC-UGCUCCGgcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 46163 | 0.67 | 0.951975 |
Target: 5'- uUGcgUUCGGccacGGCcaaacacgcgacgGCGugGGGGCCGAa -3' miRNA: 3'- gACaaAAGCU----CCG-------------CGCugCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 38159 | 0.66 | 0.966044 |
Target: 5'- aCUGguaUCGGGGCGCcaucgcGGCGAuagucgcGGCCGu -3' miRNA: 3'- -GACaaaAGCUCCGCG------CUGCU-------CCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 30997 | 0.66 | 0.977158 |
Target: 5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3' miRNA: 3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 25003 | 0.68 | 0.913902 |
Target: 5'- gUGUgggCGuccguGGGCGCGGCaaGGGGCCGu -3' miRNA: 3'- gACAaaaGC-----UCCGCGCUG--CUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 24681 | 0.66 | 0.974735 |
Target: 5'- -----aUCgGAGGCGaCGACGcuGCCGAu -3' miRNA: 3'- gacaaaAG-CUCCGC-GCUGCucCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 22476 | 0.69 | 0.889303 |
Target: 5'- gUGUUUcUC-AGGCGCGACGAcGCgGAg -3' miRNA: 3'- gACAAA-AGcUCCGCGCUGCUcCGgCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 18033 | 0.68 | 0.934929 |
Target: 5'- uCUGguucgUCG-GGCuGCG-CGAGGUCGAg -3' miRNA: 3'- -GACaaa--AGCuCCG-CGCuGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 17622 | 0.68 | 0.924867 |
Target: 5'- uUGUggUCGcGGCGCGucuuGCGAGGaaGAu -3' miRNA: 3'- gACAaaAGCuCCGCGC----UGCUCCggCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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