Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 66126 | 0.67 | 0.95618 |
Target: 5'- ------cCGAGGCGCuGGCGcgcuGGGCCGc -3' miRNA: 3'- gacaaaaGCUCCGCG-CUGC----UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 188246 | 0.68 | 0.924867 |
Target: 5'- -gGUUgugUCGAGGCG-GAC-AGGUCGGc -3' miRNA: 3'- gaCAAa--AGCUCCGCgCUGcUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 103744 | 0.68 | 0.924867 |
Target: 5'- -cGgcgUCGGuucGCGCGGCGGGGCCu- -3' miRNA: 3'- gaCaaaAGCUc--CGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 18033 | 0.68 | 0.934929 |
Target: 5'- uCUGguucgUCG-GGCuGCG-CGAGGUCGAg -3' miRNA: 3'- -GACaaa--AGCuCCG-CGCuGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 96070 | 0.67 | 0.939622 |
Target: 5'- -----aUCGAcGGCGCGuuCG-GGCCGAu -3' miRNA: 3'- gacaaaAGCU-CCGCGCu-GCuCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 60047 | 0.67 | 0.951975 |
Target: 5'- -aGUUUcUCGAGGaacuccuuggucaUGCGACGcGGGCCGc -3' miRNA: 3'- gaCAAA-AGCUCC-------------GCGCUGC-UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 46163 | 0.67 | 0.951975 |
Target: 5'- uUGcgUUCGGccacGGCcaaacacgcgacgGCGugGGGGCCGAa -3' miRNA: 3'- gACaaAAGCU----CCG-------------CGCugCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 50595 | 0.67 | 0.953919 |
Target: 5'- aCUGUcUUCG-GGCGCcggccucuuccucggGACGgAGGCCa- -3' miRNA: 3'- -GACAaAAGCuCCGCG---------------CUGC-UCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 111764 | 0.67 | 0.95618 |
Target: 5'- -aGUacgUCGAGGCGcCGGCGAGcuccacgcguccGUCGAc -3' miRNA: 3'- gaCAaa-AGCUCCGC-GCUGCUC------------CGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 17622 | 0.68 | 0.924867 |
Target: 5'- uUGUggUCGcGGCGCGucuuGCGAGGaaGAu -3' miRNA: 3'- gACAaaAGCuCCGCGC----UGCUCCggCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 207698 | 0.68 | 0.919497 |
Target: 5'- uUGgccUCGucGUGCGACGGGGUCGu -3' miRNA: 3'- gACaaaAGCucCGCGCUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 25003 | 0.68 | 0.913902 |
Target: 5'- gUGUgggCGuccguGGGCGCGGCaaGGGGCCGu -3' miRNA: 3'- gACAaaaGC-----UCCGCGCUG--CUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 128375 | 0.72 | 0.778544 |
Target: 5'- -----aUCGGGGCuucgGCGGCGAGaGCCGGc -3' miRNA: 3'- gacaaaAGCUCCG----CGCUGCUC-CGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 143106 | 0.7 | 0.861295 |
Target: 5'- -cGUUUUCGAcGCGCG-CGccGCCGAg -3' miRNA: 3'- gaCAAAAGCUcCGCGCuGCucCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 62361 | 0.7 | 0.868603 |
Target: 5'- -gGUUUUCGAcGGCggugGCGGCGGGGgUGGu -3' miRNA: 3'- gaCAAAAGCU-CCG----CGCUGCUCCgGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 73949 | 0.7 | 0.868603 |
Target: 5'- uCUGgcagcCGAgacaGGCGuCGGCGAGGUCGAg -3' miRNA: 3'- -GACaaaa-GCU----CCGC-GCUGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 173299 | 0.69 | 0.87571 |
Target: 5'- -gGUUcuucUUCGAGGUgucggucgGCGACGAGGgUGAg -3' miRNA: 3'- gaCAA----AAGCUCCG--------CGCUGCUCCgGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 130188 | 0.69 | 0.87571 |
Target: 5'- -----aUCu-GGUGCGACGGGGCCGu -3' miRNA: 3'- gacaaaAGcuCCGCGCUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 157116 | 0.69 | 0.882612 |
Target: 5'- -------gGAGGCGCGAcucgcgaaCGAGGUCGAg -3' miRNA: 3'- gacaaaagCUCCGCGCU--------GCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 130008 | 0.69 | 0.908083 |
Target: 5'- ------cCGAGGCaGCGACGAG-CCGGc -3' miRNA: 3'- gacaaaaGCUCCG-CGCUGCUCcGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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