miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 3' -55.3 NC_004065.1 + 143061 0.66 0.972132
Target:  5'- uCUGgg--CGAGGgGCGcuuCGGGGgCGAc -3'
miRNA:   3'- -GACaaaaGCUCCgCGCu--GCUCCgGCU- -5'
15766 3' -55.3 NC_004065.1 + 143294 0.66 0.974735
Target:  5'- ------cCGAGGCgGCGuCgGGGGCCGGg -3'
miRNA:   3'- gacaaaaGCUCCG-CGCuG-CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 30997 0.66 0.977158
Target:  5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3'
miRNA:   3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 131760 0.66 0.977158
Target:  5'- ------gCGAGGCGCG-CGcccaGGGCCGc -3'
miRNA:   3'- gacaaaaGCUCCGCGCuGC----UCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 168177 0.66 0.977158
Target:  5'- ------gCGGGGCGCGACaGcGGCgCGAc -3'
miRNA:   3'- gacaaaaGCUCCGCGCUG-CuCCG-GCU- -5'
15766 3' -55.3 NC_004065.1 + 7368 0.67 0.952368
Target:  5'- aCUGUcggacgUGGGGCGCuGACGcGGGCCc- -3'
miRNA:   3'- -GACAaaa---GCUCCGCG-CUGC-UCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 96570 0.67 0.939622
Target:  5'- -cGUgacCGAGGCG-GAacaaucgcagaaCGAGGCCGAc -3'
miRNA:   3'- gaCAaaaGCUCCGCgCU------------GCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 210130 0.68 0.934929
Target:  5'- -cGUcUUCGAuuccucGGCgGCGACGGGGUgGAu -3'
miRNA:   3'- gaCAaAAGCU------CCG-CGCUGCUCCGgCU- -5'
15766 3' -55.3 NC_004065.1 + 197470 0.79 0.37594
Target:  5'- aUGUUUgUCGGcggauaccgccGGCGCGACGGGGCCGu -3'
miRNA:   3'- gACAAA-AGCU-----------CCGCGCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 173984 0.74 0.64391
Target:  5'- ------cUGGGGCGCGAacccucCGAGGCCGAg -3'
miRNA:   3'- gacaaaaGCUCCGCGCU------GCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 133619 0.72 0.741547
Target:  5'- ---aUUUCGAGGCGgaCGACGAGgaguucGCCGAg -3'
miRNA:   3'- gacaAAAGCUCCGC--GCUGCUC------CGGCU- -5'
15766 3' -55.3 NC_004065.1 + 146606 0.72 0.778544
Target:  5'- -----aUCGGGGcCGuCGGCGGGGCCGu -3'
miRNA:   3'- gacaaaAGCUCC-GC-GCUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 179458 0.71 0.805022
Target:  5'- -gGUgcUCGAGGaugggaGCGugGGGGCCa- -3'
miRNA:   3'- gaCAaaAGCUCCg-----CGCugCUCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 206824 0.71 0.813564
Target:  5'- gCUGcgaaUUCG-GGCGggauCGGCGGGGCCGAc -3'
miRNA:   3'- -GACaa--AAGCuCCGC----GCUGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 104600 0.71 0.821949
Target:  5'- cCUGcc--CGAGGCGCuGGCGccGGCCGAc -3'
miRNA:   3'- -GACaaaaGCUCCGCG-CUGCu-CCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 146734 0.69 0.882612
Target:  5'- ------aCGAGGCaGCGgucggccgccGCGAGGCCGGu -3'
miRNA:   3'- gacaaaaGCUCCG-CGC----------UGCUCCGGCU- -5'
15766 3' -55.3 NC_004065.1 + 22476 0.69 0.889303
Target:  5'- gUGUUUcUC-AGGCGCGACGAcGCgGAg -3'
miRNA:   3'- gACAAA-AGcUCCGCGCUGCUcCGgCU- -5'
15766 3' -55.3 NC_004065.1 + 177486 0.68 0.924867
Target:  5'- -------gGGGGCGCacGGCGGGGCCGc -3'
miRNA:   3'- gacaaaagCUCCGCG--CUGCUCCGGCu -5'
15766 3' -55.3 NC_004065.1 + 202278 0.68 0.924867
Target:  5'- -----cUCGAuGCGCGGCGGGGUCa- -3'
miRNA:   3'- gacaaaAGCUcCGCGCUGCUCCGGcu -5'
15766 3' -55.3 NC_004065.1 + 4370 0.68 0.934929
Target:  5'- gUGgagcgCGAcGGCgGCGGCGGGaGCCGGa -3'
miRNA:   3'- gACaaaa-GCU-CCG-CGCUGCUC-CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.