Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15766 | 3' | -55.3 | NC_004065.1 | + | 131760 | 0.66 | 0.977158 |
Target: 5'- ------gCGAGGCGCG-CGcccaGGGCCGc -3' miRNA: 3'- gacaaaaGCUCCGCGCuGC----UCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 127481 | 0.66 | 0.963168 |
Target: 5'- -gGUggUCG-GGCGCGGCGGGaGCg-- -3' miRNA: 3'- gaCAaaAGCuCCGCGCUGCUC-CGgcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 202278 | 0.68 | 0.924867 |
Target: 5'- -----cUCGAuGCGCGGCGGGGUCa- -3' miRNA: 3'- gacaaaAGCUcCGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 147252 | 0.66 | 0.969339 |
Target: 5'- gUGUUguaUGAuGGUGCGACGGGGUUa- -3' miRNA: 3'- gACAAaa-GCU-CCGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 168177 | 0.66 | 0.977158 |
Target: 5'- ------gCGGGGCGCGACaGcGGCgCGAc -3' miRNA: 3'- gacaaaaGCUCCGCGCUG-CuCCG-GCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 30997 | 0.66 | 0.977158 |
Target: 5'- gUGUgcgcCGGGGUgGCGAgauggaGAGGCCGGu -3' miRNA: 3'- gACAaaa-GCUCCG-CGCUg-----CUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 177486 | 0.68 | 0.924867 |
Target: 5'- -------gGGGGCGCacGGCGGGGCCGc -3' miRNA: 3'- gacaaaagCUCCGCG--CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 22476 | 0.69 | 0.889303 |
Target: 5'- gUGUUUcUC-AGGCGCGACGAcGCgGAg -3' miRNA: 3'- gACAAA-AGcUCCGCGCUGCUcCGgCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 210130 | 0.68 | 0.934929 |
Target: 5'- -cGUcUUCGAuuccucGGCgGCGACGGGGUgGAu -3' miRNA: 3'- gaCAaAAGCU------CCG-CGCUGCUCCGgCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 130183 | 0.66 | 0.963168 |
Target: 5'- -----aUCGGGGCGCaGACGcugaaacgccuGGCCGGc -3' miRNA: 3'- gacaaaAGCUCCGCG-CUGCu----------CCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 130188 | 0.69 | 0.87571 |
Target: 5'- -----aUCu-GGUGCGACGGGGCCGu -3' miRNA: 3'- gacaaaAGcuCCGCGCUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 24681 | 0.66 | 0.974735 |
Target: 5'- -----aUCgGAGGCGaCGACGcuGCCGAu -3' miRNA: 3'- gacaaaAG-CUCCGC-GCUGCucCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 18033 | 0.68 | 0.934929 |
Target: 5'- uCUGguucgUCG-GGCuGCG-CGAGGUCGAg -3' miRNA: 3'- -GACaaa--AGCuCCG-CGCuGCUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 103744 | 0.68 | 0.924867 |
Target: 5'- -cGgcgUCGGuucGCGCGGCGGGGCCu- -3' miRNA: 3'- gaCaaaAGCUc--CGCGCUGCUCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 188246 | 0.68 | 0.924867 |
Target: 5'- -gGUUgugUCGAGGCG-GAC-AGGUCGGc -3' miRNA: 3'- gaCAAa--AGCUCCGCgCUGcUCCGGCU- -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 89349 | 0.66 | 0.969339 |
Target: 5'- -----cUCGAGGCaCGAC-AGGCCGc -3' miRNA: 3'- gacaaaAGCUCCGcGCUGcUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 167582 | 0.66 | 0.969339 |
Target: 5'- uUGUUgUCGAcgucugaugugGGUGCuGGCGGGGCUGu -3' miRNA: 3'- gACAAaAGCU-----------CCGCG-CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 103290 | 0.66 | 0.972132 |
Target: 5'- -gGUUcUUCGAGGCccGCGGCGgcAGGCUc- -3' miRNA: 3'- gaCAA-AAGCUCCG--CGCUGC--UCCGGcu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 201699 | 0.66 | 0.972132 |
Target: 5'- ---cUUUCGAGacGCGUaucgGAUGAGGCCGu -3' miRNA: 3'- gacaAAAGCUC--CGCG----CUGCUCCGGCu -5' |
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15766 | 3' | -55.3 | NC_004065.1 | + | 176791 | 0.66 | 0.974735 |
Target: 5'- -gGUUUgaggCGAGGCGCGuGCGccAGaCCGAu -3' miRNA: 3'- gaCAAAa---GCUCCGCGC-UGC--UCcGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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