miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15766 5' -58.1 NC_004065.1 + 192383 0.66 0.930142
Target:  5'- gGUgGGCUUCGUC-ACGGUGAUcGCu -3'
miRNA:   3'- gCGgCCGGAGUAGuUGCCGCUGcUGc -5'
15766 5' -58.1 NC_004065.1 + 80861 0.66 0.930142
Target:  5'- gCGCCaGGCCagGUCucCGGCccccCGACGa -3'
miRNA:   3'- -GCGG-CCGGagUAGuuGCCGcu--GCUGC- -5'
15766 5' -58.1 NC_004065.1 + 151403 0.66 0.930142
Target:  5'- uCGCCGaccgcguucaCCUCAggCGGC-GCGACGACGu -3'
miRNA:   3'- -GCGGCc---------GGAGUa-GUUGcCGCUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 79530 0.66 0.930142
Target:  5'- aCGCaCGGCCgagCgggagaaggcgGUCGauGCGGCGcaGCGGCGc -3'
miRNA:   3'- -GCG-GCCGGa--G-----------UAGU--UGCCGC--UGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 197272 0.66 0.930142
Target:  5'- uGCCGGa-UCAUCGgucACGGgGAgCGACu -3'
miRNA:   3'- gCGGCCggAGUAGU---UGCCgCU-GCUGc -5'
15766 5' -58.1 NC_004065.1 + 76499 0.66 0.930142
Target:  5'- gGCCGuaaagaGCUUCAUCuucucguugagGACGGCGGCGuguuCGc -3'
miRNA:   3'- gCGGC------CGGAGUAG-----------UUGCCGCUGCu---GC- -5'
15766 5' -58.1 NC_004065.1 + 120194 0.66 0.930142
Target:  5'- gGCCccccGCCgcagCAg-GACGGCGACGAgGg -3'
miRNA:   3'- gCGGc---CGGa---GUagUUGCCGCUGCUgC- -5'
15766 5' -58.1 NC_004065.1 + 129800 0.66 0.930142
Target:  5'- uGCCcGUgUUCAacuUCGugGGCGACGugGa -3'
miRNA:   3'- gCGGcCG-GAGU---AGUugCCGCUGCugC- -5'
15766 5' -58.1 NC_004065.1 + 1473 0.66 0.930142
Target:  5'- uGCUGGUCU-GUCAGCuucGCGcGCGACGa -3'
miRNA:   3'- gCGGCCGGAgUAGUUGc--CGC-UGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 178118 0.66 0.930142
Target:  5'- cCGCa-GUCUCAgcgUCAGgaagcCGGCGAUGGCGg -3'
miRNA:   3'- -GCGgcCGGAGU---AGUU-----GCCGCUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 618 0.66 0.930142
Target:  5'- gCGCUcaGG-CUCGUCAgGCGGCgGAUGugGg -3'
miRNA:   3'- -GCGG--CCgGAGUAGU-UGCCG-CUGCugC- -5'
15766 5' -58.1 NC_004065.1 + 211742 0.66 0.930142
Target:  5'- uGUCGGCuUUCGUCcuauCGGCGcuacuccgaGCGACGc -3'
miRNA:   3'- gCGGCCG-GAGUAGuu--GCCGC---------UGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 181227 0.66 0.930142
Target:  5'- gGCCGGCUgCGUgGACGG-GACcugGACa -3'
miRNA:   3'- gCGGCCGGaGUAgUUGCCgCUG---CUGc -5'
15766 5' -58.1 NC_004065.1 + 100624 0.66 0.925134
Target:  5'- aGCa-GCCcCAUCAGCGuCGGCGGCa -3'
miRNA:   3'- gCGgcCGGaGUAGUUGCcGCUGCUGc -5'
15766 5' -58.1 NC_004065.1 + 105544 0.66 0.925134
Target:  5'- cCGCgCGGCCcuggaccCGgcgCAGCGGC-ACGGCGc -3'
miRNA:   3'- -GCG-GCCGGa------GUa--GUUGCCGcUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 201003 0.66 0.925134
Target:  5'- aCGCCGGUCUgAcUCGaggccGCGuGCGcGCGGCGc -3'
miRNA:   3'- -GCGGCCGGAgU-AGU-----UGC-CGC-UGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 141624 0.66 0.925134
Target:  5'- uGCCGGCgg---UGGCGGCucGGCGACGg -3'
miRNA:   3'- gCGGCCGgaguaGUUGCCG--CUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 167424 0.66 0.925134
Target:  5'- uGCC-GCCgg--CGGgGGCGGCGGCGc -3'
miRNA:   3'- gCGGcCGGaguaGUUgCCGCUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 139829 0.66 0.925134
Target:  5'- aGauaCGGCCUggaGUCccgggaGGCgGGCGACGGCGg -3'
miRNA:   3'- gCg--GCCGGAg--UAG------UUG-CCGCUGCUGC- -5'
15766 5' -58.1 NC_004065.1 + 203670 0.66 0.925134
Target:  5'- cCGCC-GCCgUCGcCAGCGcCGAUGACGa -3'
miRNA:   3'- -GCGGcCGG-AGUaGUUGCcGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.