miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 169854 0.66 0.999562
Target:  5'- aCCGcgacggGUUCGGGGACGg---UGACGGg -3'
miRNA:   3'- gGGCa-----CGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169141 0.66 0.999562
Target:  5'- uCCCGagacGCUCGcGAGCGcacgaucaCUUCGuACGGg -3'
miRNA:   3'- -GGGCa---CGAGUuCUUGCa-------GAAGC-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 128887 0.66 0.999562
Target:  5'- aUCGUGCggcCGAGGGCGUg--CGACGc -3'
miRNA:   3'- gGGCACGa--GUUCUUGCAgaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 68280 0.66 0.999562
Target:  5'- uCCUGgcgcUGUUCGAGGAgGgcUCggCGACGGa -3'
miRNA:   3'- -GGGC----ACGAGUUCUUgC--AGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 24950 0.66 0.999562
Target:  5'- uUCGaGCUCGAGAcgauGgGUCggUCGugGGu -3'
miRNA:   3'- gGGCaCGAGUUCU----UgCAGa-AGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 152042 0.66 0.999562
Target:  5'- uCCCGgggcgGCUCGccgcGGccAGCGUCUcggggcUCGACGu -3'
miRNA:   3'- -GGGCa----CGAGU----UC--UUGCAGA------AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 188656 0.66 0.99946
Target:  5'- gUCC--GCUCGAGGGCGcg--CGGCGGg -3'
miRNA:   3'- -GGGcaCGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 154617 0.66 0.99946
Target:  5'- aUCCGUGagcucuUCGGGGGCGUCUgccagcaccgCGACa- -3'
miRNA:   3'- -GGGCACg-----AGUUCUUGCAGAa---------GCUGcc -5'
15768 3' -50.9 NC_004065.1 + 202426 0.66 0.99946
Target:  5'- aCCG-GCUCAgauAGcGCGUCUaggguguaCGGCGGc -3'
miRNA:   3'- gGGCaCGAGU---UCuUGCAGAa-------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 140037 0.66 0.99946
Target:  5'- -aCGUGCgcagCAAGAGagacuuCGUCg-CGACGGu -3'
miRNA:   3'- ggGCACGa---GUUCUU------GCAGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 99976 0.66 0.999438
Target:  5'- -gCGUGCUCGGGccgcgggucguCGUCUUCGuCGu -3'
miRNA:   3'- ggGCACGAGUUCuu---------GCAGAAGCuGCc -5'
15768 3' -50.9 NC_004065.1 + 101320 0.66 0.999352
Target:  5'- -aCGUGCUCAGGAACcaggagggggaCGugGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGcagaa------GCugCC- -5'
15768 3' -50.9 NC_004065.1 + 148154 0.66 0.999339
Target:  5'- gCCGUGCcCGAGAACcaucUCUUCaccauCGGg -3'
miRNA:   3'- gGGCACGaGUUCUUGc---AGAAGcu---GCC- -5'
15768 3' -50.9 NC_004065.1 + 194541 0.66 0.999339
Target:  5'- gUCGUGCcCGuGAACGUCgUC-ACGGg -3'
miRNA:   3'- gGGCACGaGUuCUUGCAGaAGcUGCC- -5'
15768 3' -50.9 NC_004065.1 + 129681 0.66 0.999194
Target:  5'- uUCCGcGCUauacgccAGGGCGUCUUCGAUu- -3'
miRNA:   3'- -GGGCaCGAgu-----UCUUGCAGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 90858 0.66 0.999194
Target:  5'- aUCGgGCUguAGGACGUCacgUCGACa- -3'
miRNA:   3'- gGGCaCGAguUCUUGCAGa--AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 111777 0.66 0.999194
Target:  5'- gCCGgcgaGCUCcac-GCGUCcgUCGACGGc -3'
miRNA:   3'- gGGCa---CGAGuucuUGCAGa-AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 166846 0.66 0.999178
Target:  5'- uCCCGUuguagcaGCUCGccAGGGCcucgcggcacuuGUgUUCGACGGu -3'
miRNA:   3'- -GGGCA-------CGAGU--UCUUG------------CAgAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 68528 0.66 0.999023
Target:  5'- uCCCGgagGC-CGAGGAgG-CggCGGCGGa -3'
miRNA:   3'- -GGGCa--CGaGUUCUUgCaGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 182302 0.66 0.999023
Target:  5'- cCCCGUGaUCAAGGccACG-C-UCGAgGGg -3'
miRNA:   3'- -GGGCACgAGUUCU--UGCaGaAGCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.