Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 164843 | 0.66 | 0.998822 |
Target: 5'- gCCCGcgucuuCUCGAucACGUCUUUGACGc -3' miRNA: 3'- -GGGCac----GAGUUcuUGCAGAAGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 111777 | 0.66 | 0.999194 |
Target: 5'- gCCGgcgaGCUCcac-GCGUCcgUCGACGGc -3' miRNA: 3'- gGGCa---CGAGuucuUGCAGa-AGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 101320 | 0.66 | 0.999352 |
Target: 5'- -aCGUGCUCAGGAACcaggagggggaCGugGGg -3' miRNA: 3'- ggGCACGAGUUCUUGcagaa------GCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 99976 | 0.66 | 0.999438 |
Target: 5'- -gCGUGCUCGGGccgcgggucguCGUCUUCGuCGu -3' miRNA: 3'- ggGCACGAGUUCuu---------GCAGAAGCuGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 129681 | 0.66 | 0.999194 |
Target: 5'- uUCCGcGCUauacgccAGGGCGUCUUCGAUu- -3' miRNA: 3'- -GGGCaCGAgu-----UCUUGCAGAAGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 24950 | 0.66 | 0.999562 |
Target: 5'- uUCGaGCUCGAGAcgauGgGUCggUCGugGGu -3' miRNA: 3'- gGGCaCGAGUUCU----UgCAGa-AGCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 68280 | 0.66 | 0.999562 |
Target: 5'- uCCUGgcgcUGUUCGAGGAgGgcUCggCGACGGa -3' miRNA: 3'- -GGGC----ACGAGUUCUUgC--AGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 128887 | 0.66 | 0.999562 |
Target: 5'- aUCGUGCggcCGAGGGCGUg--CGACGc -3' miRNA: 3'- gGGCACGa--GUUCUUGCAgaaGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 169141 | 0.66 | 0.999562 |
Target: 5'- uCCCGagacGCUCGcGAGCGcacgaucaCUUCGuACGGg -3' miRNA: 3'- -GGGCa---CGAGUuCUUGCa-------GAAGC-UGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 166846 | 0.66 | 0.999178 |
Target: 5'- uCCCGUuguagcaGCUCGccAGGGCcucgcggcacuuGUgUUCGACGGu -3' miRNA: 3'- -GGGCA-------CGAGU--UCUUG------------CAgAAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 139429 | 0.66 | 0.999023 |
Target: 5'- -gCGcUGCUCAAGGACG-CUaugCgGGCGGa -3' miRNA: 3'- ggGC-ACGAGUUCUUGCaGAa--G-CUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 57021 | 0.66 | 0.998822 |
Target: 5'- aCCCGaGCUCucGAGCcauggcucgucGUCggcaCGACGGg -3' miRNA: 3'- -GGGCaCGAGuuCUUG-----------CAGaa--GCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 68528 | 0.66 | 0.999023 |
Target: 5'- uCCCGgagGC-CGAGGAgG-CggCGGCGGa -3' miRNA: 3'- -GGGCa--CGaGUUCUUgCaGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 129801 | 0.66 | 0.999023 |
Target: 5'- gCCCGUGUUCAA------CUUCGugGGc -3' miRNA: 3'- -GGGCACGAGUUcuugcaGAAGCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 119441 | 0.66 | 0.999023 |
Target: 5'- cCCUGUGCUUggGcAGCGUgaUgGACa- -3' miRNA: 3'- -GGGCACGAGuuC-UUGCAgaAgCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 94477 | 0.66 | 0.998822 |
Target: 5'- cCCCGUcguccGCcCGuccGACGUCgacgUCGACGGu -3' miRNA: 3'- -GGGCA-----CGaGUuc-UUGCAGa---AGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 90858 | 0.66 | 0.999194 |
Target: 5'- aUCGgGCUguAGGACGUCacgUCGACa- -3' miRNA: 3'- gGGCaCGAguUCUUGCAGa--AGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 182302 | 0.66 | 0.999023 |
Target: 5'- cCCCGUGaUCAAGGccACG-C-UCGAgGGg -3' miRNA: 3'- -GGGCACgAGUUCU--UGCaGaAGCUgCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 152042 | 0.66 | 0.999562 |
Target: 5'- uCCCGgggcgGCUCGccgcGGccAGCGUCUcggggcUCGACGu -3' miRNA: 3'- -GGGCa----CGAGU----UC--UUGCAGA------AGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 148743 | 0.66 | 0.998822 |
Target: 5'- gCCGcaGCUCcgacAGGGCGUCcUCGGCGu -3' miRNA: 3'- gGGCa-CGAGu---UCUUGCAGaAGCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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