miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 141084 1.12 0.011069
Target:  5'- gCCCGUGCUCAAGAACGUCUUCGACGGc -3'
miRNA:   3'- -GGGCACGAGUUCUUGCAGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 91149 0.85 0.385455
Target:  5'- aCCCGUGCUCGAGGAcccacggauCGUCgcaggCGACGGc -3'
miRNA:   3'- -GGGCACGAGUUCUU---------GCAGaa---GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 132396 0.78 0.757381
Target:  5'- cUCCGUGCcgCAAGGGCGgcUCUUCGGCa- -3'
miRNA:   3'- -GGGCACGa-GUUCUUGC--AGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 184914 0.75 0.881816
Target:  5'- gCCCGggugGCUCGGGAGCGgccgggaGACGGu -3'
miRNA:   3'- -GGGCa---CGAGUUCUUGCagaag--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 165987 0.75 0.867572
Target:  5'- gCCCGU-CUCGGGGACGUgCUgcaggaaaCGACGGa -3'
miRNA:   3'- -GGGCAcGAGUUCUUGCA-GAa-------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 172769 0.75 0.860141
Target:  5'- aUCCGUuaGCUaGAGAccgGCGUCUUCGAgGGg -3'
miRNA:   3'- -GGGCA--CGAgUUCU---UGCAGAAGCUgCC- -5'
15768 3' -50.9 NC_004065.1 + 190017 0.74 0.918723
Target:  5'- aCCCGU-CUCGGGAaguaauaGCGUUggCGGCGGu -3'
miRNA:   3'- -GGGCAcGAGUUCU-------UGCAGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 188989 0.74 0.901561
Target:  5'- gCCCGaGCUCu---GCGgCUUCGACGGa -3'
miRNA:   3'- -GGGCaCGAGuucuUGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 110147 0.74 0.895201
Target:  5'- gCCGgcaaguucucGCUCAGGGACGUCUUccccgaccucugCGGCGGc -3'
miRNA:   3'- gGGCa---------CGAGUUCUUGCAGAA------------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 224925 0.74 0.913603
Target:  5'- gCCCGUGaaagaUCAAG-GCGUCUcCGACGu -3'
miRNA:   3'- -GGGCACg----AGUUCuUGCAGAaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 207683 0.73 0.944201
Target:  5'- gCCGUuCUCAAGAucuuggccuCGUCgugCGACGGg -3'
miRNA:   3'- gGGCAcGAGUUCUu--------GCAGaa-GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 820 0.72 0.952567
Target:  5'- aCCGcGCUCcgGAGAACGUCgUUC-ACGGa -3'
miRNA:   3'- gGGCaCGAG--UUCUUGCAG-AAGcUGCC- -5'
15768 3' -50.9 NC_004065.1 + 179443 0.71 0.975088
Target:  5'- gCCCGaagacaguagggUGCUCGAGGAUGggagCGugGGg -3'
miRNA:   3'- -GGGC------------ACGAGUUCUUGCagaaGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 108375 0.71 0.966669
Target:  5'- gCCGUGUUCGAGGACGa---CGACGc -3'
miRNA:   3'- gGGCACGAGUUCUUGCagaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 148736 0.71 0.969672
Target:  5'- uCCCc--CUCAGGAAgGUCaucUUCGACGGa -3'
miRNA:   3'- -GGGcacGAGUUCUUgCAG---AAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 64495 0.71 0.969672
Target:  5'- aCCCGUccccacgcGCUCAAGGagcACGcaacccCUUCGugGGg -3'
miRNA:   3'- -GGGCA--------CGAGUUCU---UGCa-----GAAGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 26929 0.71 0.972476
Target:  5'- cCCCGaagaagGCUCAAGGAcCG-CUcCGGCGGc -3'
miRNA:   3'- -GGGCa-----CGAGUUCUU-GCaGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 152287 0.71 0.978435
Target:  5'- aCCGUGgUCGuggcguugcgcaggcGGAACGUCgggaUCGGCGa -3'
miRNA:   3'- gGGCACgAGU---------------UCUUGCAGa---AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 44368 0.71 0.972476
Target:  5'- aUCGacCUCAGGGACGUCUUCGAg-- -3'
miRNA:   3'- gGGCacGAGUUCUUGCAGAAGCUgcc -5'
15768 3' -50.9 NC_004065.1 + 170264 0.71 0.973544
Target:  5'- gCCCGUGCUCAacagccgccucaggcAGAucucgaaagaGUCcgCGACGGu -3'
miRNA:   3'- -GGGCACGAGU---------------UCUug--------CAGaaGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.