Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 169854 | 0.66 | 0.999562 |
Target: 5'- aCCGcgacggGUUCGGGGACGg---UGACGGg -3' miRNA: 3'- gGGCa-----CGAGUUCUUGCagaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 169141 | 0.66 | 0.999562 |
Target: 5'- uCCCGagacGCUCGcGAGCGcacgaucaCUUCGuACGGg -3' miRNA: 3'- -GGGCa---CGAGUuCUUGCa-------GAAGC-UGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 128887 | 0.66 | 0.999562 |
Target: 5'- aUCGUGCggcCGAGGGCGUg--CGACGc -3' miRNA: 3'- gGGCACGa--GUUCUUGCAgaaGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 68280 | 0.66 | 0.999562 |
Target: 5'- uCCUGgcgcUGUUCGAGGAgGgcUCggCGACGGa -3' miRNA: 3'- -GGGC----ACGAGUUCUUgC--AGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 24950 | 0.66 | 0.999562 |
Target: 5'- uUCGaGCUCGAGAcgauGgGUCggUCGugGGu -3' miRNA: 3'- gGGCaCGAGUUCU----UgCAGa-AGCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 152042 | 0.66 | 0.999562 |
Target: 5'- uCCCGgggcgGCUCGccgcGGccAGCGUCUcggggcUCGACGu -3' miRNA: 3'- -GGGCa----CGAGU----UC--UUGCAGA------AGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 188656 | 0.66 | 0.99946 |
Target: 5'- gUCC--GCUCGAGGGCGcg--CGGCGGg -3' miRNA: 3'- -GGGcaCGAGUUCUUGCagaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 154617 | 0.66 | 0.99946 |
Target: 5'- aUCCGUGagcucuUCGGGGGCGUCUgccagcaccgCGACa- -3' miRNA: 3'- -GGGCACg-----AGUUCUUGCAGAa---------GCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 202426 | 0.66 | 0.99946 |
Target: 5'- aCCG-GCUCAgauAGcGCGUCUaggguguaCGGCGGc -3' miRNA: 3'- gGGCaCGAGU---UCuUGCAGAa-------GCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 140037 | 0.66 | 0.99946 |
Target: 5'- -aCGUGCgcagCAAGAGagacuuCGUCg-CGACGGu -3' miRNA: 3'- ggGCACGa---GUUCUU------GCAGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 99976 | 0.66 | 0.999438 |
Target: 5'- -gCGUGCUCGGGccgcgggucguCGUCUUCGuCGu -3' miRNA: 3'- ggGCACGAGUUCuu---------GCAGAAGCuGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 101320 | 0.66 | 0.999352 |
Target: 5'- -aCGUGCUCAGGAACcaggagggggaCGugGGg -3' miRNA: 3'- ggGCACGAGUUCUUGcagaa------GCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 148154 | 0.66 | 0.999339 |
Target: 5'- gCCGUGCcCGAGAACcaucUCUUCaccauCGGg -3' miRNA: 3'- gGGCACGaGUUCUUGc---AGAAGcu---GCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 194541 | 0.66 | 0.999339 |
Target: 5'- gUCGUGCcCGuGAACGUCgUC-ACGGg -3' miRNA: 3'- gGGCACGaGUuCUUGCAGaAGcUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 129681 | 0.66 | 0.999194 |
Target: 5'- uUCCGcGCUauacgccAGGGCGUCUUCGAUu- -3' miRNA: 3'- -GGGCaCGAgu-----UCUUGCAGAAGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 90858 | 0.66 | 0.999194 |
Target: 5'- aUCGgGCUguAGGACGUCacgUCGACa- -3' miRNA: 3'- gGGCaCGAguUCUUGCAGa--AGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 111777 | 0.66 | 0.999194 |
Target: 5'- gCCGgcgaGCUCcac-GCGUCcgUCGACGGc -3' miRNA: 3'- gGGCa---CGAGuucuUGCAGa-AGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 166846 | 0.66 | 0.999178 |
Target: 5'- uCCCGUuguagcaGCUCGccAGGGCcucgcggcacuuGUgUUCGACGGu -3' miRNA: 3'- -GGGCA-------CGAGU--UCUUG------------CAgAAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 68528 | 0.66 | 0.999023 |
Target: 5'- uCCCGgagGC-CGAGGAgG-CggCGGCGGa -3' miRNA: 3'- -GGGCa--CGaGUUCUUgCaGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 182302 | 0.66 | 0.999023 |
Target: 5'- cCCCGUGaUCAAGGccACG-C-UCGAgGGg -3' miRNA: 3'- -GGGCACgAGUUCU--UGCaGaAGCUgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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