miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 139429 0.66 0.999023
Target:  5'- -gCGcUGCUCAAGGACG-CUaugCgGGCGGa -3'
miRNA:   3'- ggGC-ACGAGUUCUUGCaGAa--G-CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 129801 0.66 0.999023
Target:  5'- gCCCGUGUUCAA------CUUCGugGGc -3'
miRNA:   3'- -GGGCACGAGUUcuugcaGAAGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 119441 0.66 0.999023
Target:  5'- cCCUGUGCUUggGcAGCGUgaUgGACa- -3'
miRNA:   3'- -GGGCACGAGuuC-UUGCAgaAgCUGcc -5'
15768 3' -50.9 NC_004065.1 + 148743 0.66 0.998822
Target:  5'- gCCGcaGCUCcgacAGGGCGUCcUCGGCGu -3'
miRNA:   3'- gGGCa-CGAGu---UCUUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 57021 0.66 0.998822
Target:  5'- aCCCGaGCUCucGAGCcauggcucgucGUCggcaCGACGGg -3'
miRNA:   3'- -GGGCaCGAGuuCUUG-----------CAGaa--GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 164843 0.66 0.998822
Target:  5'- gCCCGcgucuuCUCGAucACGUCUUUGACGc -3'
miRNA:   3'- -GGGCac----GAGUUcuUGCAGAAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 94477 0.66 0.998822
Target:  5'- cCCCGUcguccGCcCGuccGACGUCgacgUCGACGGu -3'
miRNA:   3'- -GGGCA-----CGaGUuc-UUGCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 189060 0.67 0.998586
Target:  5'- -aUGUGcCUCGcguGGACGUCUUCcuGCGGg -3'
miRNA:   3'- ggGCAC-GAGUu--CUUGCAGAAGc-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 201199 0.67 0.998586
Target:  5'- uCCCG-GCUCGGGcGGCG-CggCGACGu -3'
miRNA:   3'- -GGGCaCGAGUUC-UUGCaGaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 173647 0.67 0.998312
Target:  5'- aCCGaaUGUgucGGAugGUCUcaucUCGACGGa -3'
miRNA:   3'- gGGC--ACGaguUCUugCAGA----AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 136226 0.67 0.998312
Target:  5'- gCCGggGCUgGGGAAgGUCUccuccaccgaCGACGGg -3'
miRNA:   3'- gGGCa-CGAgUUCUUgCAGAa---------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 41485 0.67 0.998312
Target:  5'- -gCGUGCgCcGGGGCGUCgg-GACGGg -3'
miRNA:   3'- ggGCACGaGuUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 186314 0.67 0.998312
Target:  5'- aCCUGUGCgccgcuUCGuaccucACGaUCUUCGACGGc -3'
miRNA:   3'- -GGGCACG------AGUucu---UGC-AGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 27184 0.67 0.997995
Target:  5'- gCCC-UGUUCAuacccgcGAGCGUCauggCGGCGGu -3'
miRNA:   3'- -GGGcACGAGUu------CUUGCAGaa--GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 96252 0.67 0.997628
Target:  5'- gCUCGUGgUCGAGGAUG-CggauggaCGGCGGg -3'
miRNA:   3'- -GGGCACgAGUUCUUGCaGaa-----GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 143509 0.67 0.997628
Target:  5'- gCCCGggaUGCUgUGAGcAGCGUCcUCGACGu -3'
miRNA:   3'- -GGGC---ACGA-GUUC-UUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 148783 0.67 0.997628
Target:  5'- aCCUGUcuGCUCGAGGA-GUgUUCGGguCGGg -3'
miRNA:   3'- -GGGCA--CGAGUUCUUgCAgAAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 146335 0.67 0.997628
Target:  5'- gCCaUGCagcgccucuUCAAGGAgGUCUaCGGCGGa -3'
miRNA:   3'- gGGcACG---------AGUUCUUgCAGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 105420 0.67 0.997208
Target:  5'- aCCCGcUGCUgGccgcgcuggugcGGGACGUgg-CGACGGa -3'
miRNA:   3'- -GGGC-ACGAgU------------UCUUGCAgaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 166432 0.67 0.997208
Target:  5'- aCCGUGCUCGucAGCcUCUucuuccucUCGAUGGu -3'
miRNA:   3'- gGGCACGAGUucUUGcAGA--------AGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.