miRNA display CGI


Results 41 - 60 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 105420 0.67 0.997208
Target:  5'- aCCCGcUGCUgGccgcgcuggugcGGGACGUgg-CGACGGa -3'
miRNA:   3'- -GGGC-ACGAgU------------UCUUGCAgaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62470 0.68 0.996727
Target:  5'- aCCG-GCgacggCAGGAGCGgccgCGGCGGu -3'
miRNA:   3'- gGGCaCGa----GUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 223156 0.68 0.996727
Target:  5'- uCCCG-GCcuUgAAGAGuCGUCgggaUCGACGGu -3'
miRNA:   3'- -GGGCaCG--AgUUCUU-GCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 89103 0.68 0.99618
Target:  5'- uCCUGgGCUCGGGAACGUaCUacgcccgagaUCcaGACGGu -3'
miRNA:   3'- -GGGCaCGAGUUCUUGCA-GA----------AG--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 202088 0.68 0.99618
Target:  5'- aCUGUGCgCAcu-GCGUCUucugUCGGCGGc -3'
miRNA:   3'- gGGCACGaGUucuUGCAGA----AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 92919 0.68 0.995561
Target:  5'- -aUGUGCUCGAGAACGaUCUuuUUGAguaaGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGC-AGA--AGCUg---CC- -5'
15768 3' -50.9 NC_004065.1 + 96691 0.68 0.995561
Target:  5'- aUCGUGCgggCGAGGggacgaagacgGCGaUUUCGACGGu -3'
miRNA:   3'- gGGCACGa--GUUCU-----------UGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169938 0.68 0.995561
Target:  5'- -aCGgGUUCGGGGACGggcUCGGCGGg -3'
miRNA:   3'- ggGCaCGAGUUCUUGCagaAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 56184 0.68 0.994861
Target:  5'- aCCGUGUuuUCGAGAAaCGUCUcCGAUu- -3'
miRNA:   3'- gGGCACG--AGUUCUU-GCAGAaGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 148661 0.68 0.994861
Target:  5'- gCCGUGCUCGugcgcGAAC-UCUUCGAg-- -3'
miRNA:   3'- gGGCACGAGUu----CUUGcAGAAGCUgcc -5'
15768 3' -50.9 NC_004065.1 + 218112 0.68 0.994075
Target:  5'- uCCUG-GUUCGGGAggaggACGUCUUUcggaGACGGu -3'
miRNA:   3'- -GGGCaCGAGUUCU-----UGCAGAAG----CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62209 0.68 0.994075
Target:  5'- gCCUGUGCUgCAccggGGAGCGggaaUCgggauaggagUCGACGGa -3'
miRNA:   3'- -GGGCACGA-GU----UCUUGC----AGa---------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 170468 0.69 0.992213
Target:  5'- gCCCGUcgccaucgGCUUcGGGGgGUCUUCGGUGGa -3'
miRNA:   3'- -GGGCA--------CGAGuUCUUgCAGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 146844 0.69 0.992213
Target:  5'- uUCGUGCUCAGcGACGUCgcgcgccgugUCGACc- -3'
miRNA:   3'- gGGCACGAGUUcUUGCAGa---------AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 204339 0.69 0.992213
Target:  5'- gCCGUGguagUCGGGGACGUCgu-GAUGGg -3'
miRNA:   3'- gGGCACg---AGUUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 616 0.69 0.991122
Target:  5'- -aCGcGCUCAGGcuCGUCaggCGGCGGa -3'
miRNA:   3'- ggGCaCGAGUUCuuGCAGaa-GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 186621 0.69 0.989914
Target:  5'- cCCCGU-CUCAAGAAcauCGUgUucacgccccaucUCGGCGGg -3'
miRNA:   3'- -GGGCAcGAGUUCUU---GCAgA------------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 138871 0.69 0.989914
Target:  5'- cCCCGUGCUCcuGcccccCGUCUUCuACGa -3'
miRNA:   3'- -GGGCACGAGuuCuu---GCAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 110965 0.69 0.98844
Target:  5'- aCCGUGCagcugaggacgggUC-AGAGCGUCgugUUGACGa -3'
miRNA:   3'- gGGCACG-------------AGuUCUUGCAGa--AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 134796 0.7 0.983752
Target:  5'- uUCGUGCUCAAGAGucUCUUCcACGa -3'
miRNA:   3'- gGGCACGAGUUCUUgcAGAAGcUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.