miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 616 0.69 0.991122
Target:  5'- -aCGcGCUCAGGcuCGUCaggCGGCGGa -3'
miRNA:   3'- ggGCaCGAGUUCuuGCAGaa-GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 820 0.72 0.952567
Target:  5'- aCCGcGCUCcgGAGAACGUCgUUC-ACGGa -3'
miRNA:   3'- gGGCaCGAG--UUCUUGCAG-AAGcUGCC- -5'
15768 3' -50.9 NC_004065.1 + 24950 0.66 0.999562
Target:  5'- uUCGaGCUCGAGAcgauGgGUCggUCGugGGu -3'
miRNA:   3'- gGGCaCGAGUUCU----UgCAGa-AGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 26929 0.71 0.972476
Target:  5'- cCCCGaagaagGCUCAAGGAcCG-CUcCGGCGGc -3'
miRNA:   3'- -GGGCa-----CGAGUUCUU-GCaGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 27184 0.67 0.997995
Target:  5'- gCCC-UGUUCAuacccgcGAGCGUCauggCGGCGGu -3'
miRNA:   3'- -GGGcACGAGUu------CUUGCAGaa--GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 41434 0.67 0.997208
Target:  5'- aCCG-GCUCGAGAuggACGUCcuUUUGGgcCGGg -3'
miRNA:   3'- gGGCaCGAGUUCU---UGCAG--AAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 41485 0.67 0.998312
Target:  5'- -gCGUGCgCcGGGGCGUCgg-GACGGg -3'
miRNA:   3'- ggGCACGaGuUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 44368 0.71 0.972476
Target:  5'- aUCGacCUCAGGGACGUCUUCGAg-- -3'
miRNA:   3'- gGGCacGAGUUCUUGCAGAAGCUgcc -5'
15768 3' -50.9 NC_004065.1 + 44777 0.7 0.979763
Target:  5'- aCCCGcGCcCGGGAACGUUgucCGACGu -3'
miRNA:   3'- -GGGCaCGaGUUCUUGCAGaa-GCUGCc -5'
15768 3' -50.9 NC_004065.1 + 56184 0.68 0.994861
Target:  5'- aCCGUGUuuUCGAGAAaCGUCUcCGAUu- -3'
miRNA:   3'- gGGCACG--AGUUCUU-GCAGAaGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 57021 0.66 0.998822
Target:  5'- aCCCGaGCUCucGAGCcauggcucgucGUCggcaCGACGGg -3'
miRNA:   3'- -GGGCaCGAGuuCUUG-----------CAGaa--GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62209 0.68 0.994075
Target:  5'- gCCUGUGCUgCAccggGGAGCGggaaUCgggauaggagUCGACGGa -3'
miRNA:   3'- -GGGCACGA-GU----UCUUGC----AGa---------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62470 0.68 0.996727
Target:  5'- aCCG-GCgacggCAGGAGCGgccgCGGCGGu -3'
miRNA:   3'- gGGCaCGa----GUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 64495 0.71 0.969672
Target:  5'- aCCCGUccccacgcGCUCAAGGagcACGcaacccCUUCGugGGg -3'
miRNA:   3'- -GGGCA--------CGAGUUCU---UGCa-----GAAGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 68280 0.66 0.999562
Target:  5'- uCCUGgcgcUGUUCGAGGAgGgcUCggCGACGGa -3'
miRNA:   3'- -GGGC----ACGAGUUCUUgC--AGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 68528 0.66 0.999023
Target:  5'- uCCCGgagGC-CGAGGAgG-CggCGGCGGa -3'
miRNA:   3'- -GGGCa--CGaGUUCUUgCaGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 89103 0.68 0.99618
Target:  5'- uCCUGgGCUCGGGAACGUaCUacgcccgagaUCcaGACGGu -3'
miRNA:   3'- -GGGCaCGAGUUCUUGCA-GA----------AG--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 90858 0.66 0.999194
Target:  5'- aUCGgGCUguAGGACGUCacgUCGACa- -3'
miRNA:   3'- gGGCaCGAguUCUUGCAGa--AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 91149 0.85 0.385455
Target:  5'- aCCCGUGCUCGAGGAcccacggauCGUCgcaggCGACGGc -3'
miRNA:   3'- -GGGCACGAGUUCUU---------GCAGaa---GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 92919 0.68 0.995561
Target:  5'- -aUGUGCUCGAGAACGaUCUuuUUGAguaaGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGC-AGA--AGCUg---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.