miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 94477 0.66 0.998822
Target:  5'- cCCCGUcguccGCcCGuccGACGUCgacgUCGACGGu -3'
miRNA:   3'- -GGGCA-----CGaGUuc-UUGCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 96252 0.67 0.997628
Target:  5'- gCUCGUGgUCGAGGAUG-CggauggaCGGCGGg -3'
miRNA:   3'- -GGGCACgAGUUCUUGCaGaa-----GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 96691 0.68 0.995561
Target:  5'- aUCGUGCgggCGAGGggacgaagacgGCGaUUUCGACGGu -3'
miRNA:   3'- gGGCACGa--GUUCU-----------UGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 99976 0.66 0.999438
Target:  5'- -gCGUGCUCGGGccgcgggucguCGUCUUCGuCGu -3'
miRNA:   3'- ggGCACGAGUUCuu---------GCAGAAGCuGCc -5'
15768 3' -50.9 NC_004065.1 + 101320 0.66 0.999352
Target:  5'- -aCGUGCUCAGGAACcaggagggggaCGugGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGcagaa------GCugCC- -5'
15768 3' -50.9 NC_004065.1 + 105420 0.67 0.997208
Target:  5'- aCCCGcUGCUgGccgcgcuggugcGGGACGUgg-CGACGGa -3'
miRNA:   3'- -GGGC-ACGAgU------------UCUUGCAgaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 108375 0.71 0.966669
Target:  5'- gCCGUGUUCGAGGACGa---CGACGc -3'
miRNA:   3'- gGGCACGAGUUCUUGCagaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 110147 0.74 0.895201
Target:  5'- gCCGgcaaguucucGCUCAGGGACGUCUUccccgaccucugCGGCGGc -3'
miRNA:   3'- gGGCa---------CGAGUUCUUGCAGAA------------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 110965 0.69 0.98844
Target:  5'- aCCGUGCagcugaggacgggUC-AGAGCGUCgugUUGACGa -3'
miRNA:   3'- gGGCACG-------------AGuUCUUGCAGa--AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 111777 0.66 0.999194
Target:  5'- gCCGgcgaGCUCcac-GCGUCcgUCGACGGc -3'
miRNA:   3'- gGGCa---CGAGuucuUGCAGa-AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 119441 0.66 0.999023
Target:  5'- cCCUGUGCUUggGcAGCGUgaUgGACa- -3'
miRNA:   3'- -GGGCACGAGuuC-UUGCAgaAgCUGcc -5'
15768 3' -50.9 NC_004065.1 + 120882 0.7 0.979763
Target:  5'- gCCCGgGgUCAGGGcgGCGUCUcgCGGCGa -3'
miRNA:   3'- -GGGCaCgAGUUCU--UGCAGAa-GCUGCc -5'
15768 3' -50.9 NC_004065.1 + 128887 0.66 0.999562
Target:  5'- aUCGUGCggcCGAGGGCGUg--CGACGc -3'
miRNA:   3'- gGGCACGa--GUUCUUGCAgaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 129681 0.66 0.999194
Target:  5'- uUCCGcGCUauacgccAGGGCGUCUUCGAUu- -3'
miRNA:   3'- -GGGCaCGAgu-----UCUUGCAGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 129801 0.66 0.999023
Target:  5'- gCCCGUGUUCAA------CUUCGugGGc -3'
miRNA:   3'- -GGGCACGAGUUcuugcaGAAGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 132396 0.78 0.757381
Target:  5'- cUCCGUGCcgCAAGGGCGgcUCUUCGGCa- -3'
miRNA:   3'- -GGGCACGa-GUUCUUGC--AGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 134796 0.7 0.983752
Target:  5'- uUCGUGCUCAAGAGucUCUUCcACGa -3'
miRNA:   3'- gGGCACGAGUUCUUgcAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 136226 0.67 0.998312
Target:  5'- gCCGggGCUgGGGAAgGUCUccuccaccgaCGACGGg -3'
miRNA:   3'- gGGCa-CGAgUUCUUgCAGAa---------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 138871 0.69 0.989914
Target:  5'- cCCCGUGCUCcuGcccccCGUCUUCuACGa -3'
miRNA:   3'- -GGGCACGAGuuCuu---GCAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 139429 0.66 0.999023
Target:  5'- -gCGcUGCUCAAGGACG-CUaugCgGGCGGa -3'
miRNA:   3'- ggGC-ACGAGUUCUUGCaGAa--G-CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.