Results 81 - 83 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 218112 | 0.68 | 0.994075 |
Target: 5'- uCCUG-GUUCGGGAggaggACGUCUUUcggaGACGGu -3' miRNA: 3'- -GGGCaCGAGUUCU-----UGCAGAAG----CUGCC- -5' |
|||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 223156 | 0.68 | 0.996727 |
Target: 5'- uCCCG-GCcuUgAAGAGuCGUCgggaUCGACGGu -3' miRNA: 3'- -GGGCaCG--AgUUCUU-GCAGa---AGCUGCC- -5' |
|||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 224925 | 0.74 | 0.913603 |
Target: 5'- gCCCGUGaaagaUCAAG-GCGUCUcCGACGu -3' miRNA: 3'- -GGGCACg----AGUUCuUGCAGAaGCUGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home