miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 224925 0.74 0.913603
Target:  5'- gCCCGUGaaagaUCAAG-GCGUCUcCGACGu -3'
miRNA:   3'- -GGGCACg----AGUUCuUGCAGAaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 223156 0.68 0.996727
Target:  5'- uCCCG-GCcuUgAAGAGuCGUCgggaUCGACGGu -3'
miRNA:   3'- -GGGCaCG--AgUUCUU-GCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 218112 0.68 0.994075
Target:  5'- uCCUG-GUUCGGGAggaggACGUCUUUcggaGACGGu -3'
miRNA:   3'- -GGGCaCGAGUUCU-----UGCAGAAG----CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 213009 0.7 0.98184
Target:  5'- gUCGUGgUCGGGAuggAUGUCUUaGACGGu -3'
miRNA:   3'- gGGCACgAGUUCU---UGCAGAAgCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 207683 0.73 0.944201
Target:  5'- gCCGUuCUCAAGAucuuggccuCGUCgugCGACGGg -3'
miRNA:   3'- gGGCAcGAGUUCUu--------GCAGaa-GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 204339 0.69 0.992213
Target:  5'- gCCGUGguagUCGGGGACGUCgu-GAUGGg -3'
miRNA:   3'- gGGCACg---AGUUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 202426 0.66 0.99946
Target:  5'- aCCG-GCUCAgauAGcGCGUCUaggguguaCGGCGGc -3'
miRNA:   3'- gGGCaCGAGU---UCuUGCAGAa-------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 202088 0.68 0.99618
Target:  5'- aCUGUGCgCAcu-GCGUCUucugUCGGCGGc -3'
miRNA:   3'- gGGCACGaGUucuUGCAGA----AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 201199 0.67 0.998586
Target:  5'- uCCCG-GCUCGGGcGGCG-CggCGACGu -3'
miRNA:   3'- -GGGCaCGAGUUC-UUGCaGaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 194541 0.66 0.999339
Target:  5'- gUCGUGCcCGuGAACGUCgUC-ACGGg -3'
miRNA:   3'- gGGCACGaGUuCUUGCAGaAGcUGCC- -5'
15768 3' -50.9 NC_004065.1 + 190017 0.74 0.918723
Target:  5'- aCCCGU-CUCGGGAaguaauaGCGUUggCGGCGGu -3'
miRNA:   3'- -GGGCAcGAGUUCU-------UGCAGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 189060 0.67 0.998586
Target:  5'- -aUGUGcCUCGcguGGACGUCUUCcuGCGGg -3'
miRNA:   3'- ggGCAC-GAGUu--CUUGCAGAAGc-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 188989 0.74 0.901561
Target:  5'- gCCCGaGCUCu---GCGgCUUCGACGGa -3'
miRNA:   3'- -GGGCaCGAGuucuUGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 188656 0.66 0.99946
Target:  5'- gUCC--GCUCGAGGGCGcg--CGGCGGg -3'
miRNA:   3'- -GGGcaCGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 186621 0.69 0.989914
Target:  5'- cCCCGU-CUCAAGAAcauCGUgUucacgccccaucUCGGCGGg -3'
miRNA:   3'- -GGGCAcGAGUUCUU---GCAgA------------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 186314 0.67 0.998312
Target:  5'- aCCUGUGCgccgcuUCGuaccucACGaUCUUCGACGGc -3'
miRNA:   3'- -GGGCACG------AGUucu---UGC-AGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 184914 0.75 0.881816
Target:  5'- gCCCGggugGCUCGGGAGCGgccgggaGACGGu -3'
miRNA:   3'- -GGGCa---CGAGUUCUUGCagaag--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 182302 0.66 0.999023
Target:  5'- cCCCGUGaUCAAGGccACG-C-UCGAgGGg -3'
miRNA:   3'- -GGGCACgAGUUCU--UGCaGaAGCUgCC- -5'
15768 3' -50.9 NC_004065.1 + 179443 0.71 0.975088
Target:  5'- gCCCGaagacaguagggUGCUCGAGGAUGggagCGugGGg -3'
miRNA:   3'- -GGGC------------ACGAGUUCUUGCagaaGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 173647 0.67 0.998312
Target:  5'- aCCGaaUGUgucGGAugGUCUcaucUCGACGGa -3'
miRNA:   3'- gGGC--ACGaguUCUugCAGA----AGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.