miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 172769 0.75 0.860141
Target:  5'- aUCCGUuaGCUaGAGAccgGCGUCUUCGAgGGg -3'
miRNA:   3'- -GGGCA--CGAgUUCU---UGCAGAAGCUgCC- -5'
15768 3' -50.9 NC_004065.1 + 170468 0.69 0.992213
Target:  5'- gCCCGUcgccaucgGCUUcGGGGgGUCUUCGGUGGa -3'
miRNA:   3'- -GGGCA--------CGAGuUCUUgCAGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 170264 0.71 0.973544
Target:  5'- gCCCGUGCUCAacagccgccucaggcAGAucucgaaagaGUCcgCGACGGu -3'
miRNA:   3'- -GGGCACGAGU---------------UCUug--------CAGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169938 0.68 0.995561
Target:  5'- -aCGgGUUCGGGGACGggcUCGGCGGg -3'
miRNA:   3'- ggGCaCGAGUUCUUGCagaAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169854 0.66 0.999562
Target:  5'- aCCGcgacggGUUCGGGGACGg---UGACGGg -3'
miRNA:   3'- gGGCa-----CGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169141 0.66 0.999562
Target:  5'- uCCCGagacGCUCGcGAGCGcacgaucaCUUCGuACGGg -3'
miRNA:   3'- -GGGCa---CGAGUuCUUGCa-------GAAGC-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 166846 0.66 0.999178
Target:  5'- uCCCGUuguagcaGCUCGccAGGGCcucgcggcacuuGUgUUCGACGGu -3'
miRNA:   3'- -GGGCA-------CGAGU--UCUUG------------CAgAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 166432 0.67 0.997208
Target:  5'- aCCGUGCUCGucAGCcUCUucuuccucUCGAUGGu -3'
miRNA:   3'- gGGCACGAGUucUUGcAGA--------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 165987 0.75 0.867572
Target:  5'- gCCCGU-CUCGGGGACGUgCUgcaggaaaCGACGGa -3'
miRNA:   3'- -GGGCAcGAGUUCUUGCA-GAa-------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 164843 0.66 0.998822
Target:  5'- gCCCGcgucuuCUCGAucACGUCUUUGACGc -3'
miRNA:   3'- -GGGCac----GAGUUcuUGCAGAAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 154617 0.66 0.99946
Target:  5'- aUCCGUGagcucuUCGGGGGCGUCUgccagcaccgCGACa- -3'
miRNA:   3'- -GGGCACg-----AGUUCUUGCAGAa---------GCUGcc -5'
15768 3' -50.9 NC_004065.1 + 152287 0.71 0.978435
Target:  5'- aCCGUGgUCGuggcguugcgcaggcGGAACGUCgggaUCGGCGa -3'
miRNA:   3'- gGGCACgAGU---------------UCUUGCAGa---AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 152042 0.66 0.999562
Target:  5'- uCCCGgggcgGCUCGccgcGGccAGCGUCUcggggcUCGACGu -3'
miRNA:   3'- -GGGCa----CGAGU----UC--UUGCAGA------AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 148783 0.67 0.997628
Target:  5'- aCCUGUcuGCUCGAGGA-GUgUUCGGguCGGg -3'
miRNA:   3'- -GGGCA--CGAGUUCUUgCAgAAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 148743 0.66 0.998822
Target:  5'- gCCGcaGCUCcgacAGGGCGUCcUCGGCGu -3'
miRNA:   3'- gGGCa-CGAGu---UCUUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 148736 0.71 0.969672
Target:  5'- uCCCc--CUCAGGAAgGUCaucUUCGACGGa -3'
miRNA:   3'- -GGGcacGAGUUCUUgCAG---AAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 148661 0.68 0.994861
Target:  5'- gCCGUGCUCGugcgcGAAC-UCUUCGAg-- -3'
miRNA:   3'- gGGCACGAGUu----CUUGcAGAAGCUgcc -5'
15768 3' -50.9 NC_004065.1 + 148154 0.66 0.999339
Target:  5'- gCCGUGCcCGAGAACcaucUCUUCaccauCGGg -3'
miRNA:   3'- gGGCACGaGUUCUUGc---AGAAGcu---GCC- -5'
15768 3' -50.9 NC_004065.1 + 146844 0.69 0.992213
Target:  5'- uUCGUGCUCAGcGACGUCgcgcgccgugUCGACc- -3'
miRNA:   3'- gGGCACGAGUUcUUGCAGa---------AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 146335 0.67 0.997628
Target:  5'- gCCaUGCagcgccucuUCAAGGAgGUCUaCGGCGGa -3'
miRNA:   3'- gGGcACG---------AGUUCUUgCAGAaGCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.