miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 223156 0.68 0.996727
Target:  5'- uCCCG-GCcuUgAAGAGuCGUCgggaUCGACGGu -3'
miRNA:   3'- -GGGCaCG--AgUUCUU-GCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 138871 0.69 0.989914
Target:  5'- cCCCGUGCUCcuGcccccCGUCUUCuACGa -3'
miRNA:   3'- -GGGCACGAGuuCuu---GCAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 186621 0.69 0.989914
Target:  5'- cCCCGU-CUCAAGAAcauCGUgUucacgccccaucUCGGCGGg -3'
miRNA:   3'- -GGGCAcGAGUUCUU---GCAgA------------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 146844 0.69 0.992213
Target:  5'- uUCGUGCUCAGcGACGUCgcgcgccgugUCGACc- -3'
miRNA:   3'- gGGCACGAGUUcUUGCAGa---------AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 204339 0.69 0.992213
Target:  5'- gCCGUGguagUCGGGGACGUCgu-GAUGGg -3'
miRNA:   3'- gGGCACg---AGUUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62209 0.68 0.994075
Target:  5'- gCCUGUGCUgCAccggGGAGCGggaaUCgggauaggagUCGACGGa -3'
miRNA:   3'- -GGGCACGA-GU----UCUUGC----AGa---------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169938 0.68 0.995561
Target:  5'- -aCGgGUUCGGGGACGggcUCGGCGGg -3'
miRNA:   3'- ggGCaCGAGUUCUUGCagaAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 96691 0.68 0.995561
Target:  5'- aUCGUGCgggCGAGGggacgaagacgGCGaUUUCGACGGu -3'
miRNA:   3'- gGGCACGa--GUUCU-----------UGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 62470 0.68 0.996727
Target:  5'- aCCG-GCgacggCAGGAGCGgccgCGGCGGu -3'
miRNA:   3'- gGGCaCGa----GUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 134796 0.7 0.983752
Target:  5'- uUCGUGCUCAAGAGucUCUUCcACGa -3'
miRNA:   3'- gGGCACGAGUUCUUgcAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 213009 0.7 0.98184
Target:  5'- gUCGUGgUCGGGAuggAUGUCUUaGACGGu -3'
miRNA:   3'- gGGCACgAGUUCU---UGCAGAAgCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 44777 0.7 0.979763
Target:  5'- aCCCGcGCcCGGGAACGUUgucCGACGu -3'
miRNA:   3'- -GGGCaCGaGUUCUUGCAGaa-GCUGCc -5'
15768 3' -50.9 NC_004065.1 + 184914 0.75 0.881816
Target:  5'- gCCCGggugGCUCGGGAGCGgccgggaGACGGu -3'
miRNA:   3'- -GGGCa---CGAGUUCUUGCagaag--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 110147 0.74 0.895201
Target:  5'- gCCGgcaaguucucGCUCAGGGACGUCUUccccgaccucugCGGCGGc -3'
miRNA:   3'- gGGCa---------CGAGUUCUUGCAGAA------------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 224925 0.74 0.913603
Target:  5'- gCCCGUGaaagaUCAAG-GCGUCUcCGACGu -3'
miRNA:   3'- -GGGCACg----AGUUCuUGCAGAaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 207683 0.73 0.944201
Target:  5'- gCCGUuCUCAAGAucuuggccuCGUCgugCGACGGg -3'
miRNA:   3'- gGGCAcGAGUUCUu--------GCAGaa-GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 108375 0.71 0.966669
Target:  5'- gCCGUGUUCGAGGACGa---CGACGc -3'
miRNA:   3'- gGGCACGAGUUCUUGCagaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 26929 0.71 0.972476
Target:  5'- cCCCGaagaagGCUCAAGGAcCG-CUcCGGCGGc -3'
miRNA:   3'- -GGGCa-----CGAGUUCUU-GCaGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 44368 0.71 0.972476
Target:  5'- aUCGacCUCAGGGACGUCUUCGAg-- -3'
miRNA:   3'- gGGCacGAGUUCUUGCAGAAGCUgcc -5'
15768 3' -50.9 NC_004065.1 + 120882 0.7 0.979763
Target:  5'- gCCCGgGgUCAGGGcgGCGUCUcgCGGCGa -3'
miRNA:   3'- -GGGCaCgAGUUCU--UGCAGAa-GCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.