Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15768 | 3' | -50.9 | NC_004065.1 | + | 141084 | 1.12 | 0.011069 |
Target: 5'- gCCCGUGCUCAAGAACGUCUUCGACGGc -3' miRNA: 3'- -GGGCACGAGUUCUUGCAGAAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 56184 | 0.68 | 0.994861 |
Target: 5'- aCCGUGUuuUCGAGAAaCGUCUcCGAUu- -3' miRNA: 3'- gGGCACG--AGUUCUU-GCAGAaGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 89103 | 0.68 | 0.99618 |
Target: 5'- uCCUGgGCUCGGGAACGUaCUacgcccgagaUCcaGACGGu -3' miRNA: 3'- -GGGCaCGAGUUCUUGCA-GA----------AG--CUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 152042 | 0.66 | 0.999562 |
Target: 5'- uCCCGgggcgGCUCGccgcGGccAGCGUCUcggggcUCGACGu -3' miRNA: 3'- -GGGCa----CGAGU----UC--UUGCAGA------AGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 188989 | 0.74 | 0.901561 |
Target: 5'- gCCCGaGCUCu---GCGgCUUCGACGGa -3' miRNA: 3'- -GGGCaCGAGuucuUGCaGAAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 190017 | 0.74 | 0.918723 |
Target: 5'- aCCCGU-CUCGGGAaguaauaGCGUUggCGGCGGu -3' miRNA: 3'- -GGGCAcGAGUUCU-------UGCAGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 64495 | 0.71 | 0.969672 |
Target: 5'- aCCCGUccccacgcGCUCAAGGagcACGcaacccCUUCGugGGg -3' miRNA: 3'- -GGGCA--------CGAGUUCU---UGCa-----GAAGCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 148736 | 0.71 | 0.969672 |
Target: 5'- uCCCc--CUCAGGAAgGUCaucUUCGACGGa -3' miRNA: 3'- -GGGcacGAGUUCUUgCAG---AAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 152287 | 0.71 | 0.978435 |
Target: 5'- aCCGUGgUCGuggcguugcgcaggcGGAACGUCgggaUCGGCGa -3' miRNA: 3'- gGGCACgAGU---------------UCUUGCAGa---AGCUGCc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 148661 | 0.68 | 0.994861 |
Target: 5'- gCCGUGCUCGugcgcGAAC-UCUUCGAg-- -3' miRNA: 3'- gGGCACGAGUu----CUUGcAGAAGCUgcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 616 | 0.69 | 0.991122 |
Target: 5'- -aCGcGCUCAGGcuCGUCaggCGGCGGa -3' miRNA: 3'- ggGCaCGAGUUCuuGCAGaa-GCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 179443 | 0.71 | 0.975088 |
Target: 5'- gCCCGaagacaguagggUGCUCGAGGAUGggagCGugGGg -3' miRNA: 3'- -GGGC------------ACGAGUUCUUGCagaaGCugCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 132396 | 0.78 | 0.757381 |
Target: 5'- cUCCGUGCcgCAAGGGCGgcUCUUCGGCa- -3' miRNA: 3'- -GGGCACGa-GUUCUUGC--AGAAGCUGcc -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 170468 | 0.69 | 0.992213 |
Target: 5'- gCCCGUcgccaucgGCUUcGGGGgGUCUUCGGUGGa -3' miRNA: 3'- -GGGCA--------CGAGuUCUUgCAGAAGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 172769 | 0.75 | 0.860141 |
Target: 5'- aUCCGUuaGCUaGAGAccgGCGUCUUCGAgGGg -3' miRNA: 3'- -GGGCA--CGAgUUCU---UGCAGAAGCUgCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 170264 | 0.71 | 0.973544 |
Target: 5'- gCCCGUGCUCAacagccgccucaggcAGAucucgaaagaGUCcgCGACGGu -3' miRNA: 3'- -GGGCACGAGU---------------UCUug--------CAGaaGCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 218112 | 0.68 | 0.994075 |
Target: 5'- uCCUG-GUUCGGGAggaggACGUCUUUcggaGACGGu -3' miRNA: 3'- -GGGCaCGAGUUCU-----UGCAGAAG----CUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 92919 | 0.68 | 0.995561 |
Target: 5'- -aUGUGCUCGAGAACGaUCUuuUUGAguaaGGg -3' miRNA: 3'- ggGCACGAGUUCUUGC-AGA--AGCUg---CC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 165987 | 0.75 | 0.867572 |
Target: 5'- gCCCGU-CUCGGGGACGUgCUgcaggaaaCGACGGa -3' miRNA: 3'- -GGGCAcGAGUUCUUGCA-GAa-------GCUGCC- -5' |
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15768 | 3' | -50.9 | NC_004065.1 | + | 820 | 0.72 | 0.952567 |
Target: 5'- aCCGcGCUCcgGAGAACGUCgUUC-ACGGa -3' miRNA: 3'- gGGCaCGAG--UUCUUGCAG-AAGcUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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