miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 166432 0.67 0.997208
Target:  5'- aCCGUGCUCGucAGCcUCUucuuccucUCGAUGGu -3'
miRNA:   3'- gGGCACGAGUucUUGcAGA--------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 89103 0.68 0.99618
Target:  5'- uCCUGgGCUCGGGAACGUaCUacgcccgagaUCcaGACGGu -3'
miRNA:   3'- -GGGCaCGAGUUCUUGCA-GA----------AG--CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 179443 0.71 0.975088
Target:  5'- gCCCGaagacaguagggUGCUCGAGGAUGggagCGugGGg -3'
miRNA:   3'- -GGGC------------ACGAGUUCUUGCagaaGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 165987 0.75 0.867572
Target:  5'- gCCCGU-CUCGGGGACGUgCUgcaggaaaCGACGGa -3'
miRNA:   3'- -GGGCAcGAGUUCUUGCA-GAa-------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 148154 0.66 0.999339
Target:  5'- gCCGUGCcCGAGAACcaucUCUUCaccauCGGg -3'
miRNA:   3'- gGGCACGaGUUCUUGc---AGAAGcu---GCC- -5'
15768 3' -50.9 NC_004065.1 + 164843 0.66 0.998822
Target:  5'- gCCCGcgucuuCUCGAucACGUCUUUGACGc -3'
miRNA:   3'- -GGGCac----GAGUUcuUGCAGAAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 56184 0.68 0.994861
Target:  5'- aCCGUGUuuUCGAGAAaCGUCUcCGAUu- -3'
miRNA:   3'- gGGCACG--AGUUCUU-GCAGAaGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 172769 0.75 0.860141
Target:  5'- aUCCGUuaGCUaGAGAccgGCGUCUUCGAgGGg -3'
miRNA:   3'- -GGGCA--CGAgUUCU---UGCAGAAGCUgCC- -5'
15768 3' -50.9 NC_004065.1 + 189060 0.67 0.998586
Target:  5'- -aUGUGcCUCGcguGGACGUCUUCcuGCGGg -3'
miRNA:   3'- ggGCAC-GAGUu--CUUGCAGAAGc-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 132396 0.78 0.757381
Target:  5'- cUCCGUGCcgCAAGGGCGgcUCUUCGGCa- -3'
miRNA:   3'- -GGGCACGa-GUUCUUGC--AGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 92919 0.68 0.995561
Target:  5'- -aUGUGCUCGAGAACGaUCUuuUUGAguaaGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGC-AGA--AGCUg---CC- -5'
15768 3' -50.9 NC_004065.1 + 148783 0.67 0.997628
Target:  5'- aCCUGUcuGCUCGAGGA-GUgUUCGGguCGGg -3'
miRNA:   3'- -GGGCA--CGAGUUCUUgCAgAAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 170468 0.69 0.992213
Target:  5'- gCCCGUcgccaucgGCUUcGGGGgGUCUUCGGUGGa -3'
miRNA:   3'- -GGGCA--------CGAGuUCUUgCAGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 152287 0.71 0.978435
Target:  5'- aCCGUGgUCGuggcguugcgcaggcGGAACGUCgggaUCGGCGa -3'
miRNA:   3'- gGGCACgAGU---------------UCUUGCAGa---AGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 64495 0.71 0.969672
Target:  5'- aCCCGUccccacgcGCUCAAGGagcACGcaacccCUUCGugGGg -3'
miRNA:   3'- -GGGCA--------CGAGUUCU---UGCa-----GAAGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 188989 0.74 0.901561
Target:  5'- gCCCGaGCUCu---GCGgCUUCGACGGa -3'
miRNA:   3'- -GGGCaCGAGuucuUGCaGAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 188656 0.66 0.99946
Target:  5'- gUCC--GCUCGAGGGCGcg--CGGCGGg -3'
miRNA:   3'- -GGGcaCGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 194541 0.66 0.999339
Target:  5'- gUCGUGCcCGuGAACGUCgUC-ACGGg -3'
miRNA:   3'- gGGCACGaGUuCUUGCAGaAGcUGCC- -5'
15768 3' -50.9 NC_004065.1 + 182302 0.66 0.999023
Target:  5'- cCCCGUGaUCAAGGccACG-C-UCGAgGGg -3'
miRNA:   3'- -GGGCACgAGUUCU--UGCaGaAGCUgCC- -5'
15768 3' -50.9 NC_004065.1 + 94477 0.66 0.998822
Target:  5'- cCCCGUcguccGCcCGuccGACGUCgacgUCGACGGu -3'
miRNA:   3'- -GGGCA-----CGaGUuc-UUGCAGa---AGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.