miRNA display CGI


Results 41 - 60 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 148154 0.66 0.999339
Target:  5'- gCCGUGCcCGAGAACcaucUCUUCaccauCGGg -3'
miRNA:   3'- gGGCACGaGUUCUUGc---AGAAGcu---GCC- -5'
15768 3' -50.9 NC_004065.1 + 41485 0.67 0.998312
Target:  5'- -gCGUGCgCcGGGGCGUCgg-GACGGg -3'
miRNA:   3'- ggGCACGaGuUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 57021 0.66 0.998822
Target:  5'- aCCCGaGCUCucGAGCcauggcucgucGUCggcaCGACGGg -3'
miRNA:   3'- -GGGCaCGAGuuCUUG-----------CAGaa--GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 26929 0.71 0.972476
Target:  5'- cCCCGaagaagGCUCAAGGAcCG-CUcCGGCGGc -3'
miRNA:   3'- -GGGCa-----CGAGUUCUU-GCaGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 108375 0.71 0.966669
Target:  5'- gCCGUGUUCGAGGACGa---CGACGc -3'
miRNA:   3'- gGGCACGAGUUCUUGCagaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 136226 0.67 0.998312
Target:  5'- gCCGggGCUgGGGAAgGUCUccuccaccgaCGACGGg -3'
miRNA:   3'- gGGCa-CGAgUUCUUgCAGAa---------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 173647 0.67 0.998312
Target:  5'- aCCGaaUGUgucGGAugGUCUcaucUCGACGGa -3'
miRNA:   3'- gGGC--ACGaguUCUugCAGA----AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 110147 0.74 0.895201
Target:  5'- gCCGgcaaguucucGCUCAGGGACGUCUUccccgaccucugCGGCGGc -3'
miRNA:   3'- gGGCa---------CGAGUUCUUGCAGAA------------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 148743 0.66 0.998822
Target:  5'- gCCGcaGCUCcgacAGGGCGUCcUCGGCGu -3'
miRNA:   3'- gGGCa-CGAGu---UCUUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 146335 0.67 0.997628
Target:  5'- gCCaUGCagcgccucuUCAAGGAgGUCUaCGGCGGa -3'
miRNA:   3'- gGGcACG---------AGUUCUUgCAGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 223156 0.68 0.996727
Target:  5'- uCCCG-GCcuUgAAGAGuCGUCgggaUCGACGGu -3'
miRNA:   3'- -GGGCaCG--AgUUCUU-GCAGa---AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 213009 0.7 0.98184
Target:  5'- gUCGUGgUCGGGAuggAUGUCUUaGACGGu -3'
miRNA:   3'- gGGCACgAGUUCU---UGCAGAAgCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169854 0.66 0.999562
Target:  5'- aCCGcgacggGUUCGGGGACGg---UGACGGg -3'
miRNA:   3'- gGGCa-----CGAGUUCUUGCagaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 143509 0.67 0.997628
Target:  5'- gCCCGggaUGCUgUGAGcAGCGUCcUCGACGu -3'
miRNA:   3'- -GGGC---ACGA-GUUC-UUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 41434 0.67 0.997208
Target:  5'- aCCG-GCUCGAGAuggACGUCcuUUUGGgcCGGg -3'
miRNA:   3'- gGGCaCGAGUUCU---UGCAG--AAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 96252 0.67 0.997628
Target:  5'- gCUCGUGgUCGAGGAUG-CggauggaCGGCGGg -3'
miRNA:   3'- -GGGCACgAGUUCUUGCaGaa-----GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 146844 0.69 0.992213
Target:  5'- uUCGUGCUCAGcGACGUCgcgcgccgugUCGACc- -3'
miRNA:   3'- gGGCACGAGUUcUUGCAGa---------AGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 186621 0.69 0.989914
Target:  5'- cCCCGU-CUCAAGAAcauCGUgUucacgccccaucUCGGCGGg -3'
miRNA:   3'- -GGGCAcGAGUUCUU---GCAgA------------AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 138871 0.69 0.989914
Target:  5'- cCCCGUGCUCcuGcccccCGUCUUCuACGa -3'
miRNA:   3'- -GGGCACGAGuuCuu---GCAGAAGcUGCc -5'
15768 3' -50.9 NC_004065.1 + 134796 0.7 0.983752
Target:  5'- uUCGUGCUCAAGAGucUCUUCcACGa -3'
miRNA:   3'- gGGCACGAGUUCUUgcAGAAGcUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.