miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 3' -50.9 NC_004065.1 + 224925 0.74 0.913603
Target:  5'- gCCCGUGaaagaUCAAG-GCGUCUcCGACGu -3'
miRNA:   3'- -GGGCACg----AGUUCuUGCAGAaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 41434 0.67 0.997208
Target:  5'- aCCG-GCUCGAGAuggACGUCcuUUUGGgcCGGg -3'
miRNA:   3'- gGGCaCGAGUUCU---UGCAG--AAGCU--GCC- -5'
15768 3' -50.9 NC_004065.1 + 96252 0.67 0.997628
Target:  5'- gCUCGUGgUCGAGGAUG-CggauggaCGGCGGg -3'
miRNA:   3'- -GGGCACgAGUUCUUGCaGaa-----GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 169141 0.66 0.999562
Target:  5'- uCCCGagacGCUCGcGAGCGcacgaucaCUUCGuACGGg -3'
miRNA:   3'- -GGGCa---CGAGUuCUUGCa-------GAAGC-UGCC- -5'
15768 3' -50.9 NC_004065.1 + 128887 0.66 0.999562
Target:  5'- aUCGUGCggcCGAGGGCGUg--CGACGc -3'
miRNA:   3'- gGGCACGa--GUUCUUGCAgaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 68280 0.66 0.999562
Target:  5'- uCCUGgcgcUGUUCGAGGAgGgcUCggCGACGGa -3'
miRNA:   3'- -GGGC----ACGAGUUCUUgC--AGaaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 24950 0.66 0.999562
Target:  5'- uUCGaGCUCGAGAcgauGgGUCggUCGugGGu -3'
miRNA:   3'- gGGCaCGAGUUCU----UgCAGa-AGCugCC- -5'
15768 3' -50.9 NC_004065.1 + 99976 0.66 0.999438
Target:  5'- -gCGUGCUCGGGccgcgggucguCGUCUUCGuCGu -3'
miRNA:   3'- ggGCACGAGUUCuu---------GCAGAAGCuGCc -5'
15768 3' -50.9 NC_004065.1 + 101320 0.66 0.999352
Target:  5'- -aCGUGCUCAGGAACcaggagggggaCGugGGg -3'
miRNA:   3'- ggGCACGAGUUCUUGcagaa------GCugCC- -5'
15768 3' -50.9 NC_004065.1 + 111777 0.66 0.999194
Target:  5'- gCCGgcgaGCUCcac-GCGUCcgUCGACGGc -3'
miRNA:   3'- gGGCa---CGAGuucuUGCAGa-AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 129681 0.66 0.999194
Target:  5'- uUCCGcGCUauacgccAGGGCGUCUUCGAUu- -3'
miRNA:   3'- -GGGCaCGAgu-----UCUUGCAGAAGCUGcc -5'
15768 3' -50.9 NC_004065.1 + 166846 0.66 0.999178
Target:  5'- uCCCGUuguagcaGCUCGccAGGGCcucgcggcacuuGUgUUCGACGGu -3'
miRNA:   3'- -GGGCA-------CGAGU--UCUUG------------CAgAAGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 139429 0.66 0.999023
Target:  5'- -gCGcUGCUCAAGGACG-CUaugCgGGCGGa -3'
miRNA:   3'- ggGC-ACGAGUUCUUGCaGAa--G-CUGCC- -5'
15768 3' -50.9 NC_004065.1 + 148743 0.66 0.998822
Target:  5'- gCCGcaGCUCcgacAGGGCGUCcUCGGCGu -3'
miRNA:   3'- gGGCa-CGAGu---UCUUGCAGaAGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 201199 0.67 0.998586
Target:  5'- uCCCG-GCUCGGGcGGCG-CggCGACGu -3'
miRNA:   3'- -GGGCaCGAGUUC-UUGCaGaaGCUGCc -5'
15768 3' -50.9 NC_004065.1 + 173647 0.67 0.998312
Target:  5'- aCCGaaUGUgucGGAugGUCUcaucUCGACGGa -3'
miRNA:   3'- gGGC--ACGaguUCUugCAGA----AGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 136226 0.67 0.998312
Target:  5'- gCCGggGCUgGGGAAgGUCUccuccaccgaCGACGGg -3'
miRNA:   3'- gGGCa-CGAgUUCUUgCAGAa---------GCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 41485 0.67 0.998312
Target:  5'- -gCGUGCgCcGGGGCGUCgg-GACGGg -3'
miRNA:   3'- ggGCACGaGuUCUUGCAGaagCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 146335 0.67 0.997628
Target:  5'- gCCaUGCagcgccucuUCAAGGAgGUCUaCGGCGGa -3'
miRNA:   3'- gGGcACG---------AGUUCUUgCAGAaGCUGCC- -5'
15768 3' -50.9 NC_004065.1 + 143509 0.67 0.997628
Target:  5'- gCCCGggaUGCUgUGAGcAGCGUCcUCGACGu -3'
miRNA:   3'- -GGGC---ACGA-GUUC-UUGCAGaAGCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.