miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15768 5' -54.7 NC_004065.1 + 189388 0.66 0.977433
Target:  5'- -gCCGuUCGGCgucaccgUCGCCGaggauuugauuuucUCGGGAAGg -3'
miRNA:   3'- gaGGC-AGUCGa------AGCGGC--------------AGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 197057 0.66 0.975759
Target:  5'- cCUCCGUCAuGCUcCGCCG-CGAcGucGa -3'
miRNA:   3'- -GAGGCAGU-CGAaGCGGCaGCU-CuuCa -5'
15768 5' -54.7 NC_004065.1 + 91198 0.67 0.96785
Target:  5'- -gCCGUCGGCgugcgcggcaucggCGCCGcCgGAGAAGa -3'
miRNA:   3'- gaGGCAGUCGaa------------GCGGCaG-CUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 192592 0.67 0.967245
Target:  5'- gUCCGUCuuccacgcgcuccAGCUgaacgCGCCGUCGGacaccgcgucGAAGg -3'
miRNA:   3'- gAGGCAG-------------UCGAa----GCGGCAGCU----------CUUCa -5'
15768 5' -54.7 NC_004065.1 + 139992 0.67 0.967245
Target:  5'- -gCCGUCgccaugagcguggAGCUgaCGCCGcCGAGAAGc -3'
miRNA:   3'- gaGGCAG-------------UCGAa-GCGGCaGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 67715 0.67 0.961084
Target:  5'- -aCCGUCGGUaUCGCCGUgaCGAGc--- -3'
miRNA:   3'- gaGGCAGUCGaAGCGGCA--GCUCuuca -5'
15768 5' -54.7 NC_004065.1 + 181612 0.68 0.949802
Target:  5'- cCUCCGUCAuguGCUcCGUCGUcCGAGGu-- -3'
miRNA:   3'- -GAGGCAGU---CGAaGCGGCA-GCUCUuca -5'
15768 5' -54.7 NC_004065.1 + 76677 0.68 0.945602
Target:  5'- aUCgCGUCGGCgcCGCCGUCcccGAAGa -3'
miRNA:   3'- gAG-GCAGUCGaaGCGGCAGcu-CUUCa -5'
15768 5' -54.7 NC_004065.1 + 138227 0.68 0.941178
Target:  5'- gCUCUgcgauGUCgaGGCgcucgcCGCCGUCGAGGAGg -3'
miRNA:   3'- -GAGG-----CAG--UCGaa----GCGGCAGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 153654 0.68 0.941178
Target:  5'- aUCCG-CGGCggCGCCGgcgCGAuGGAGa -3'
miRNA:   3'- gAGGCaGUCGaaGCGGCa--GCU-CUUCa -5'
15768 5' -54.7 NC_004065.1 + 15765 0.68 0.936528
Target:  5'- aUCCGUUcguGCUUCGCCGcCuccugugaagggGAGAAGa -3'
miRNA:   3'- gAGGCAGu--CGAAGCGGCaG------------CUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 139075 0.68 0.936528
Target:  5'- -gCCagaAGCUcacCGCCGUCGAGAGGg -3'
miRNA:   3'- gaGGcagUCGAa--GCGGCAGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 172769 0.68 0.926543
Target:  5'- aUCCGUUAGCUagagaccggCGUCuUCGAGggGg -3'
miRNA:   3'- gAGGCAGUCGAa--------GCGGcAGCUCuuCa -5'
15768 5' -54.7 NC_004065.1 + 155947 0.69 0.921207
Target:  5'- -aCCGUCGuGCUgcgCGagucauCCGUCGAGAAGc -3'
miRNA:   3'- gaGGCAGU-CGAa--GC------GGCAGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 200366 0.69 0.90985
Target:  5'- --gCGUCcuCUUCGCCGgCGAGGAGg -3'
miRNA:   3'- gagGCAGucGAAGCGGCaGCUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 199188 0.69 0.903833
Target:  5'- -gUCGUCGGCUUCGUCGagggUCGcGAGGa -3'
miRNA:   3'- gaGGCAGUCGAAGCGGC----AGCuCUUCa -5'
15768 5' -54.7 NC_004065.1 + 224586 0.69 0.897591
Target:  5'- --aCGUCcGa-UCGCCGUCGGGGAGUu -3'
miRNA:   3'- gagGCAGuCgaAGCGGCAGCUCUUCA- -5'
15768 5' -54.7 NC_004065.1 + 163481 0.7 0.876851
Target:  5'- gCUCCGUCGGCggCGCCGguggcggCGgcuucaauucuucGGAAGa -3'
miRNA:   3'- -GAGGCAGUCGaaGCGGCa------GC-------------UCUUCa -5'
15768 5' -54.7 NC_004065.1 + 124654 0.71 0.846365
Target:  5'- -gCCGUCAGCgaguccgggucCGCCGUCaGGAAGa -3'
miRNA:   3'- gaGGCAGUCGaa---------GCGGCAGcUCUUCa -5'
15768 5' -54.7 NC_004065.1 + 101502 0.71 0.840039
Target:  5'- uCUCCGUCgacgccgcggaGGCaUCGUCGUCGGuGGAGg -3'
miRNA:   3'- -GAGGCAG-----------UCGaAGCGGCAGCU-CUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.