miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15769 5' -57.2 NC_004065.1 + 198009 0.66 0.93729
Target:  5'- cUGCGCgauggCCUCggaggcggUCGCgGUCGCCGGc -3'
miRNA:   3'- cACGCGaa---GGAGg-------AGUGgCAGUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 77352 0.66 0.93729
Target:  5'- --uCGCUgucCCUCg-CGCCGUCGCCGc -3'
miRNA:   3'- cacGCGAa--GGAGgaGUGGCAGUGGCu -5'
15769 5' -57.2 NC_004065.1 + 183146 0.66 0.932515
Target:  5'- -cGUGCa---UCCUCGCCGUCACgGc -3'
miRNA:   3'- caCGCGaaggAGGAGUGGCAGUGgCu -5'
15769 5' -57.2 NC_004065.1 + 120792 0.66 0.932515
Target:  5'- -cGcCGCUaccgCCgccgUCUC-CCGUCGCCGAg -3'
miRNA:   3'- caC-GCGAa---GGa---GGAGuGGCAGUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 76947 0.66 0.932515
Target:  5'- -aGaCGCcguccUCCUCCUCAuccUCGUCgACCGAc -3'
miRNA:   3'- caC-GCGa----AGGAGGAGU---GGCAG-UGGCU- -5'
15769 5' -57.2 NC_004065.1 + 191578 0.66 0.932515
Target:  5'- aGUGUGCcgaugagCCUCCUgcCGCCGUC-CaCGAc -3'
miRNA:   3'- -CACGCGaa-----GGAGGA--GUGGCAGuG-GCU- -5'
15769 5' -57.2 NC_004065.1 + 64137 0.66 0.927517
Target:  5'- -aGgGCUucUCCUCC-CGCUGgcCGCCGAc -3'
miRNA:   3'- caCgCGA--AGGAGGaGUGGCa-GUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 144490 0.66 0.927517
Target:  5'- cGUGCGCcgUCUUCaCgaaaaaGCUGUUGCCGAa -3'
miRNA:   3'- -CACGCGa-AGGAG-Gag----UGGCAGUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 180949 0.66 0.927517
Target:  5'- -aGCGCgccgguaCCUCCUUGCCgGUCagcugGCCGGa -3'
miRNA:   3'- caCGCGaa-----GGAGGAGUGG-CAG-----UGGCU- -5'
15769 5' -57.2 NC_004065.1 + 196297 0.66 0.922297
Target:  5'- -gGCGCUgggCCgagcCACCGUCGCCa- -3'
miRNA:   3'- caCGCGAa--GGaggaGUGGCAGUGGcu -5'
15769 5' -57.2 NC_004065.1 + 167553 0.66 0.922297
Target:  5'- -cGcCGCggCCgcUCCU-GCCGUCGCCGGu -3'
miRNA:   3'- caC-GCGaaGG--AGGAgUGGCAGUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 129378 0.66 0.922297
Target:  5'- cGUGCGagUCCcugUUCUCGCCGcugcCGCCGAc -3'
miRNA:   3'- -CACGCgaAGG---AGGAGUGGCa---GUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 127509 0.66 0.916853
Target:  5'- -cGCGCgucgUCCUCugccgccugCUCAugggccCCGUCGCCGu -3'
miRNA:   3'- caCGCGa---AGGAG---------GAGU------GGCAGUGGCu -5'
15769 5' -57.2 NC_004065.1 + 103755 0.66 0.916853
Target:  5'- -cGCGCggcggggCCUCCggACCGUCGCg-- -3'
miRNA:   3'- caCGCGaa-----GGAGGagUGGCAGUGgcu -5'
15769 5' -57.2 NC_004065.1 + 103665 0.66 0.916853
Target:  5'- cGUGCGCUUCCaCCUUgaaaucauuGCCGUaCGuCUGGa -3'
miRNA:   3'- -CACGCGAAGGaGGAG---------UGGCA-GU-GGCU- -5'
15769 5' -57.2 NC_004065.1 + 193325 0.66 0.911188
Target:  5'- uUGCGCUUCagaCUCugCGacagguaucuucUCACCGGg -3'
miRNA:   3'- cACGCGAAGgagGAGugGC------------AGUGGCU- -5'
15769 5' -57.2 NC_004065.1 + 147666 0.66 0.911188
Target:  5'- -aGCGUgUCCaUCuCUC-CCGUCACCa- -3'
miRNA:   3'- caCGCGaAGG-AG-GAGuGGCAGUGGcu -5'
15769 5' -57.2 NC_004065.1 + 181906 0.66 0.911188
Target:  5'- cGUGCGCgaggUCCcaCCgcCGCCGcCACCGc -3'
miRNA:   3'- -CACGCGa---AGGa-GGa-GUGGCaGUGGCu -5'
15769 5' -57.2 NC_004065.1 + 212408 0.66 0.911188
Target:  5'- -aGCGagaUCCUCuCUC-CCGUCGCCc- -3'
miRNA:   3'- caCGCga-AGGAG-GAGuGGCAGUGGcu -5'
15769 5' -57.2 NC_004065.1 + 2502 0.67 0.905303
Target:  5'- -gGUGCUaacaugCCacuaaaUCCUCACCGUCAaCCGu -3'
miRNA:   3'- caCGCGAa-----GG------AGGAGUGGCAGU-GGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.