Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15770 | 3' | -50.7 | NC_004065.1 | + | 178626 | 0.66 | 0.998788 |
Target: 5'- cCCCUGCGGAGGuacguAAGcagCUCAauaucgaccUCAAGg -3' miRNA: 3'- -GGGACGUCUCC-----UUCuuaGGGU---------AGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 63788 | 0.66 | 0.998788 |
Target: 5'- aCCUUGUAGGGGuccucGGggUCgaacuCCAUCAc- -3' miRNA: 3'- -GGGACGUCUCCu----UCuuAG-----GGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 129988 | 0.66 | 0.998788 |
Target: 5'- gCUCUGCGGAGGAuaccgCCC--CGAGg -3' miRNA: 3'- -GGGACGUCUCCUucuuaGGGuaGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 168476 | 0.66 | 0.99854 |
Target: 5'- uCCCgucgGUGGGGGuuAAGAucuucGUCCCGUCGc- -3' miRNA: 3'- -GGGa---CGUCUCC--UUCU-----UAGGGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 180042 | 0.66 | 0.99854 |
Target: 5'- aCCgUGCGGAuGGAAGGAcUUCGUCGu- -3' miRNA: 3'- -GGgACGUCU-CCUUCUUaGGGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 156920 | 0.66 | 0.998372 |
Target: 5'- gCCgGCAccgacGAGGAAGAGUCUCccgacgcucucuucaGUCGGGg -3' miRNA: 3'- gGGaCGU-----CUCCUUCUUAGGG---------------UAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 129837 | 0.66 | 0.99825 |
Target: 5'- -gCUGCGcGAGGAccugcAGggUCugagCCGUCAGGa -3' miRNA: 3'- ggGACGU-CUCCU-----UCuuAG----GGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 50136 | 0.66 | 0.99825 |
Target: 5'- aCCUGCuGAGGAugaGGAGaCCCAa---- -3' miRNA: 3'- gGGACGuCUCCU---UCUUaGGGUaguuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 132902 | 0.66 | 0.997914 |
Target: 5'- gUCCUcguguggacaGCAGAGGAGGAGgaggagaCCGUCGc- -3' miRNA: 3'- -GGGA----------CGUCUCCUUCUUag-----GGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 112132 | 0.66 | 0.997877 |
Target: 5'- uUCUGCAGcGGGAaccggucAGGAUCUCuuuUCAGGa -3' miRNA: 3'- gGGACGUC-UCCU-------UCUUAGGGu--AGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 152263 | 0.67 | 0.997525 |
Target: 5'- aCCUGuCGGAGGAc--AUCCagGUCGAGg -3' miRNA: 3'- gGGAC-GUCUCCUucuUAGGg-UAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 17888 | 0.67 | 0.997525 |
Target: 5'- ---aGCGGcGGAcGGAcgCCCGUCGAGa -3' miRNA: 3'- gggaCGUCuCCU-UCUuaGGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 209423 | 0.67 | 0.996564 |
Target: 5'- gUCCUGgaAGAGGAacAGAuggCCGUCGAGg -3' miRNA: 3'- -GGGACg-UCUCCU--UCUuagGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 62720 | 0.67 | 0.995243 |
Target: 5'- cUCCUGCGGcgucggucaguguAGGAGGGAcUCCAgCAAGa -3' miRNA: 3'- -GGGACGUC-------------UCCUUCUUaGGGUaGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 189080 | 0.68 | 0.993718 |
Target: 5'- uUCCUGCGGGGGcucGAGGAccucgCCCGgugucucugugcUCAGGg -3' miRNA: 3'- -GGGACGUCUCC---UUCUUa----GGGU------------AGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 116610 | 0.68 | 0.991713 |
Target: 5'- uCUUUGUGGAGGAGGAugugCaCCGUCAGc -3' miRNA: 3'- -GGGACGUCUCCUUCUua--G-GGUAGUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 133521 | 0.68 | 0.990535 |
Target: 5'- gUCCUcCGacGAGGAGGAAUCUgaCGUCGAGg -3' miRNA: 3'- -GGGAcGU--CUCCUUCUUAGG--GUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 229339 | 0.69 | 0.98779 |
Target: 5'- aCCCcGCGGGGGggGGugcCCCGcCAAu -3' miRNA: 3'- -GGGaCGUCUCCuuCUua-GGGUaGUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 118603 | 0.7 | 0.980494 |
Target: 5'- gCCCUGCAucucacagacGGGGAGGAAUCCgGc---- -3' miRNA: 3'- -GGGACGU----------CUCCUUCUUAGGgUaguuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 30297 | 0.7 | 0.978245 |
Target: 5'- gCCUGCGGgucGGGcAGGAUCCUuuucgcGUCGAGu -3' miRNA: 3'- gGGACGUC---UCCuUCUUAGGG------UAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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