miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15770 3' -50.7 NC_004065.1 + 140603 1.12 0.008804
Target:  5'- gCCCUGCAGAGGAAGAAUCCCAUCAAGg -3'
miRNA:   3'- -GGGACGUCUCCUUCUUAGGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 43581 0.76 0.79023
Target:  5'- gCCUGCcucuggcguGGAGGAAGAuggucccggugaggCCCAUCAAGa -3'
miRNA:   3'- gGGACG---------UCUCCUUCUua------------GGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 166306 0.74 0.887185
Target:  5'- uCCCUGUAacuGcGGAGGAcUCCUAUCAGGu -3'
miRNA:   3'- -GGGACGU---CuCCUUCUuAGGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 170212 0.73 0.906888
Target:  5'- gCCUGCAcGAGGAGGAucucuccuGUCUCggCGAGa -3'
miRNA:   3'- gGGACGU-CUCCUUCU--------UAGGGuaGUUC- -5'
15770 3' -50.7 NC_004065.1 + 37351 0.72 0.9298
Target:  5'- gCCCaccGCAGAGGAAGAAcCCCGacgCGAc -3'
miRNA:   3'- -GGGa--CGUCUCCUUCUUaGGGUa--GUUc -5'
15770 3' -50.7 NC_004065.1 + 79311 0.72 0.943063
Target:  5'- -gCUGCAGAGGAAGGuggacgagcucgagAUCCCcaaCGAGa -3'
miRNA:   3'- ggGACGUCUCCUUCU--------------UAGGGua-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 164576 0.71 0.948822
Target:  5'- gUCCUGCAG-GGAccGGuugCCCGUCAAc -3'
miRNA:   3'- -GGGACGUCuCCU--UCuuaGGGUAGUUc -5'
15770 3' -50.7 NC_004065.1 + 198877 0.71 0.967002
Target:  5'- gUCCUGCGGAaaccccaGGggGAucaccuUCCCGUCcAGc -3'
miRNA:   3'- -GGGACGUCU-------CCuuCUu-----AGGGUAGuUC- -5'
15770 3' -50.7 NC_004065.1 + 6845 0.7 0.973183
Target:  5'- cCCCUGgAccGAGGAGGAccgucgAUCCCGacgacucuUCAAGg -3'
miRNA:   3'- -GGGACgU--CUCCUUCU------UAGGGU--------AGUUC- -5'
15770 3' -50.7 NC_004065.1 + 28707 0.7 0.975811
Target:  5'- uCCCgGCAGGGcGGAGA-UCCUGUcCGAGg -3'
miRNA:   3'- -GGGaCGUCUC-CUUCUuAGGGUA-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 33862 0.7 0.975811
Target:  5'- uCCCUGaggagccccCAGAuGGcGGAGUCCCAggCGAGg -3'
miRNA:   3'- -GGGAC---------GUCU-CCuUCUUAGGGUa-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 33327 0.7 0.975811
Target:  5'- cUCCUcgaAGAGGc-GGAUCCCGUCGGGg -3'
miRNA:   3'- -GGGAcg-UCUCCuuCUUAGGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 143002 0.7 0.975811
Target:  5'- aCCUUGCGGAcGGAAuuGAGUCgCUAUCAc- -3'
miRNA:   3'- -GGGACGUCU-CCUU--CUUAG-GGUAGUuc -5'
15770 3' -50.7 NC_004065.1 + 30297 0.7 0.978245
Target:  5'- gCCUGCGGgucGGGcAGGAUCCUuuucgcGUCGAGu -3'
miRNA:   3'- gGGACGUC---UCCuUCUUAGGG------UAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 118603 0.7 0.980494
Target:  5'- gCCCUGCAucucacagacGGGGAGGAAUCCgGc---- -3'
miRNA:   3'- -GGGACGU----------CUCCUUCUUAGGgUaguuc -5'
15770 3' -50.7 NC_004065.1 + 229339 0.69 0.98779
Target:  5'- aCCCcGCGGGGGggGGugcCCCGcCAAu -3'
miRNA:   3'- -GGGaCGUCUCCuuCUua-GGGUaGUUc -5'
15770 3' -50.7 NC_004065.1 + 133521 0.68 0.990535
Target:  5'- gUCCUcCGacGAGGAGGAAUCUgaCGUCGAGg -3'
miRNA:   3'- -GGGAcGU--CUCCUUCUUAGG--GUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 116610 0.68 0.991713
Target:  5'- uCUUUGUGGAGGAGGAugugCaCCGUCAGc -3'
miRNA:   3'- -GGGACGUCUCCUUCUua--G-GGUAGUUc -5'
15770 3' -50.7 NC_004065.1 + 189080 0.68 0.993718
Target:  5'- uUCCUGCGGGGGcucGAGGAccucgCCCGgugucucugugcUCAGGg -3'
miRNA:   3'- -GGGACGUCUCC---UUCUUa----GGGU------------AGUUC- -5'
15770 3' -50.7 NC_004065.1 + 62720 0.67 0.995243
Target:  5'- cUCCUGCGGcgucggucaguguAGGAGGGAcUCCAgCAAGa -3'
miRNA:   3'- -GGGACGUC-------------UCCUUCUUaGGGUaGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.