Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15770 | 3' | -50.7 | NC_004065.1 | + | 33327 | 0.7 | 0.975811 |
Target: 5'- cUCCUcgaAGAGGc-GGAUCCCGUCGGGg -3' miRNA: 3'- -GGGAcg-UCUCCuuCUUAGGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 143002 | 0.7 | 0.975811 |
Target: 5'- aCCUUGCGGAcGGAAuuGAGUCgCUAUCAc- -3' miRNA: 3'- -GGGACGUCU-CCUU--CUUAG-GGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 28707 | 0.7 | 0.975811 |
Target: 5'- uCCCgGCAGGGcGGAGA-UCCUGUcCGAGg -3' miRNA: 3'- -GGGaCGUCUC-CUUCUuAGGGUA-GUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 33862 | 0.7 | 0.975811 |
Target: 5'- uCCCUGaggagccccCAGAuGGcGGAGUCCCAggCGAGg -3' miRNA: 3'- -GGGAC---------GUCU-CCuUCUUAGGGUa-GUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 6845 | 0.7 | 0.973183 |
Target: 5'- cCCCUGgAccGAGGAGGAccgucgAUCCCGacgacucuUCAAGg -3' miRNA: 3'- -GGGACgU--CUCCUUCU------UAGGGU--------AGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 198877 | 0.71 | 0.967002 |
Target: 5'- gUCCUGCGGAaaccccaGGggGAucaccuUCCCGUCcAGc -3' miRNA: 3'- -GGGACGUCU-------CCuuCUu-----AGGGUAGuUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 164576 | 0.71 | 0.948822 |
Target: 5'- gUCCUGCAG-GGAccGGuugCCCGUCAAc -3' miRNA: 3'- -GGGACGUCuCCU--UCuuaGGGUAGUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 79311 | 0.72 | 0.943063 |
Target: 5'- -gCUGCAGAGGAAGGuggacgagcucgagAUCCCcaaCGAGa -3' miRNA: 3'- ggGACGUCUCCUUCU--------------UAGGGua-GUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 37351 | 0.72 | 0.9298 |
Target: 5'- gCCCaccGCAGAGGAAGAAcCCCGacgCGAc -3' miRNA: 3'- -GGGa--CGUCUCCUUCUUaGGGUa--GUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 170212 | 0.73 | 0.906888 |
Target: 5'- gCCUGCAcGAGGAGGAucucuccuGUCUCggCGAGa -3' miRNA: 3'- gGGACGU-CUCCUUCU--------UAGGGuaGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 166306 | 0.74 | 0.887185 |
Target: 5'- uCCCUGUAacuGcGGAGGAcUCCUAUCAGGu -3' miRNA: 3'- -GGGACGU---CuCCUUCUuAGGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 43581 | 0.76 | 0.79023 |
Target: 5'- gCCUGCcucuggcguGGAGGAAGAuggucccggugaggCCCAUCAAGa -3' miRNA: 3'- gGGACG---------UCUCCUUCUua------------GGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 140603 | 1.12 | 0.008804 |
Target: 5'- gCCCUGCAGAGGAAGAAUCCCAUCAAGg -3' miRNA: 3'- -GGGACGUCUCCUUCUUAGGGUAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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