miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15770 3' -50.7 NC_004065.1 + 6845 0.7 0.973183
Target:  5'- cCCCUGgAccGAGGAGGAccgucgAUCCCGacgacucuUCAAGg -3'
miRNA:   3'- -GGGACgU--CUCCUUCU------UAGGGU--------AGUUC- -5'
15770 3' -50.7 NC_004065.1 + 17888 0.67 0.997525
Target:  5'- ---aGCGGcGGAcGGAcgCCCGUCGAGa -3'
miRNA:   3'- gggaCGUCuCCU-UCUuaGGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 28707 0.7 0.975811
Target:  5'- uCCCgGCAGGGcGGAGA-UCCUGUcCGAGg -3'
miRNA:   3'- -GGGaCGUCUC-CUUCUuAGGGUA-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 30297 0.7 0.978245
Target:  5'- gCCUGCGGgucGGGcAGGAUCCUuuucgcGUCGAGu -3'
miRNA:   3'- gGGACGUC---UCCuUCUUAGGG------UAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 33327 0.7 0.975811
Target:  5'- cUCCUcgaAGAGGc-GGAUCCCGUCGGGg -3'
miRNA:   3'- -GGGAcg-UCUCCuuCUUAGGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 33862 0.7 0.975811
Target:  5'- uCCCUGaggagccccCAGAuGGcGGAGUCCCAggCGAGg -3'
miRNA:   3'- -GGGAC---------GUCU-CCuUCUUAGGGUa-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 37351 0.72 0.9298
Target:  5'- gCCCaccGCAGAGGAAGAAcCCCGacgCGAc -3'
miRNA:   3'- -GGGa--CGUCUCCUUCUUaGGGUa--GUUc -5'
15770 3' -50.7 NC_004065.1 + 43581 0.76 0.79023
Target:  5'- gCCUGCcucuggcguGGAGGAAGAuggucccggugaggCCCAUCAAGa -3'
miRNA:   3'- gGGACG---------UCUCCUUCUua------------GGGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 50136 0.66 0.99825
Target:  5'- aCCUGCuGAGGAugaGGAGaCCCAa---- -3'
miRNA:   3'- gGGACGuCUCCU---UCUUaGGGUaguuc -5'
15770 3' -50.7 NC_004065.1 + 62720 0.67 0.995243
Target:  5'- cUCCUGCGGcgucggucaguguAGGAGGGAcUCCAgCAAGa -3'
miRNA:   3'- -GGGACGUC-------------UCCUUCUUaGGGUaGUUC- -5'
15770 3' -50.7 NC_004065.1 + 63788 0.66 0.998788
Target:  5'- aCCUUGUAGGGGuccucGGggUCgaacuCCAUCAc- -3'
miRNA:   3'- -GGGACGUCUCCu----UCuuAG-----GGUAGUuc -5'
15770 3' -50.7 NC_004065.1 + 79311 0.72 0.943063
Target:  5'- -gCUGCAGAGGAAGGuggacgagcucgagAUCCCcaaCGAGa -3'
miRNA:   3'- ggGACGUCUCCUUCU--------------UAGGGua-GUUC- -5'
15770 3' -50.7 NC_004065.1 + 112132 0.66 0.997877
Target:  5'- uUCUGCAGcGGGAaccggucAGGAUCUCuuuUCAGGa -3'
miRNA:   3'- gGGACGUC-UCCU-------UCUUAGGGu--AGUUC- -5'
15770 3' -50.7 NC_004065.1 + 116610 0.68 0.991713
Target:  5'- uCUUUGUGGAGGAGGAugugCaCCGUCAGc -3'
miRNA:   3'- -GGGACGUCUCCUUCUua--G-GGUAGUUc -5'
15770 3' -50.7 NC_004065.1 + 118603 0.7 0.980494
Target:  5'- gCCCUGCAucucacagacGGGGAGGAAUCCgGc---- -3'
miRNA:   3'- -GGGACGU----------CUCCUUCUUAGGgUaguuc -5'
15770 3' -50.7 NC_004065.1 + 129837 0.66 0.99825
Target:  5'- -gCUGCGcGAGGAccugcAGggUCugagCCGUCAGGa -3'
miRNA:   3'- ggGACGU-CUCCU-----UCuuAG----GGUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 129988 0.66 0.998788
Target:  5'- gCUCUGCGGAGGAuaccgCCC--CGAGg -3'
miRNA:   3'- -GGGACGUCUCCUucuuaGGGuaGUUC- -5'
15770 3' -50.7 NC_004065.1 + 132902 0.66 0.997914
Target:  5'- gUCCUcguguggacaGCAGAGGAGGAGgaggagaCCGUCGc- -3'
miRNA:   3'- -GGGA----------CGUCUCCUUCUUag-----GGUAGUuc -5'
15770 3' -50.7 NC_004065.1 + 133521 0.68 0.990535
Target:  5'- gUCCUcCGacGAGGAGGAAUCUgaCGUCGAGg -3'
miRNA:   3'- -GGGAcGU--CUCCUUCUUAGG--GUAGUUC- -5'
15770 3' -50.7 NC_004065.1 + 140603 1.12 0.008804
Target:  5'- gCCCUGCAGAGGAAGAAUCCCAUCAAGg -3'
miRNA:   3'- -GGGACGUCUCCUUCUUAGGGUAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.