Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15770 | 3' | -50.7 | NC_004065.1 | + | 37351 | 0.72 | 0.9298 |
Target: 5'- gCCCaccGCAGAGGAAGAAcCCCGacgCGAc -3' miRNA: 3'- -GGGa--CGUCUCCUUCUUaGGGUa--GUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 79311 | 0.72 | 0.943063 |
Target: 5'- -gCUGCAGAGGAAGGuggacgagcucgagAUCCCcaaCGAGa -3' miRNA: 3'- ggGACGUCUCCUUCU--------------UAGGGua-GUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 198877 | 0.71 | 0.967002 |
Target: 5'- gUCCUGCGGAaaccccaGGggGAucaccuUCCCGUCcAGc -3' miRNA: 3'- -GGGACGUCU-------CCuuCUu-----AGGGUAGuUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 33327 | 0.7 | 0.975811 |
Target: 5'- cUCCUcgaAGAGGc-GGAUCCCGUCGGGg -3' miRNA: 3'- -GGGAcg-UCUCCuuCUUAGGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 33862 | 0.7 | 0.975811 |
Target: 5'- uCCCUGaggagccccCAGAuGGcGGAGUCCCAggCGAGg -3' miRNA: 3'- -GGGAC---------GUCU-CCuUCUUAGGGUa-GUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 116610 | 0.68 | 0.991713 |
Target: 5'- uCUUUGUGGAGGAGGAugugCaCCGUCAGc -3' miRNA: 3'- -GGGACGUCUCCUUCUua--G-GGUAGUUc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 62720 | 0.67 | 0.995243 |
Target: 5'- cUCCUGCGGcgucggucaguguAGGAGGGAcUCCAgCAAGa -3' miRNA: 3'- -GGGACGUC-------------UCCUUCUUaGGGUaGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 17888 | 0.67 | 0.997525 |
Target: 5'- ---aGCGGcGGAcGGAcgCCCGUCGAGa -3' miRNA: 3'- gggaCGUCuCCU-UCUuaGGGUAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 152263 | 0.67 | 0.997525 |
Target: 5'- aCCUGuCGGAGGAc--AUCCagGUCGAGg -3' miRNA: 3'- gGGAC-GUCUCCUucuUAGGg-UAGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 168476 | 0.66 | 0.99854 |
Target: 5'- uCCCgucgGUGGGGGuuAAGAucuucGUCCCGUCGc- -3' miRNA: 3'- -GGGa---CGUCUCC--UUCU-----UAGGGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 63788 | 0.66 | 0.998788 |
Target: 5'- aCCUUGUAGGGGuccucGGggUCgaacuCCAUCAc- -3' miRNA: 3'- -GGGACGUCUCCu----UCuuAG-----GGUAGUuc -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 129988 | 0.66 | 0.998788 |
Target: 5'- gCUCUGCGGAGGAuaccgCCC--CGAGg -3' miRNA: 3'- -GGGACGUCUCCUucuuaGGGuaGUUC- -5' |
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15770 | 3' | -50.7 | NC_004065.1 | + | 166306 | 0.74 | 0.887185 |
Target: 5'- uCCCUGUAacuGcGGAGGAcUCCUAUCAGGu -3' miRNA: 3'- -GGGACGU---CuCCUUCUuAGGGUAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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