Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15770 | 5' | -56.6 | NC_004065.1 | + | 140637 | 1.09 | 0.003793 |
Target: 5'- uCUCCUUCCUGCUCUUCCGCUGCCACGa -3' miRNA: 3'- -GAGGAAGGACGAGAAGGCGACGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 185112 | 0.74 | 0.576618 |
Target: 5'- cCUCCUcuagaUCCgagGuCUCUUCUGCUGCCuccGCGa -3' miRNA: 3'- -GAGGA-----AGGa--C-GAGAAGGCGACGG---UGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 103450 | 0.72 | 0.676027 |
Target: 5'- -aCCUUCCUGCgCgugCUGCUgcGCCACGc -3' miRNA: 3'- gaGGAAGGACGaGaa-GGCGA--CGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 129387 | 0.7 | 0.753411 |
Target: 5'- -----cCCUGUUCUcgCCGCUGCCGCc -3' miRNA: 3'- gaggaaGGACGAGAa-GGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 66348 | 0.7 | 0.766409 |
Target: 5'- gCUCCUUCUgcuuUGUaCUgaggccgcugcugccUCCGCUGCCGCu -3' miRNA: 3'- -GAGGAAGG----ACGaGA---------------AGGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 169558 | 0.69 | 0.824316 |
Target: 5'- gUCUcggUUUCUGCgcgCUguugCCGCUGUCGCGg -3' miRNA: 3'- gAGG---AAGGACGa--GAa---GGCGACGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 167381 | 0.69 | 0.840539 |
Target: 5'- uCUCCgccgCCaaUGCUgCUgucaaugCUGCUGCCGCGg -3' miRNA: 3'- -GAGGaa--GG--ACGA-GAa------GGCGACGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 97114 | 0.68 | 0.848384 |
Target: 5'- uCUCC-UCCUcCUCcUCUGCUGuCCACa -3' miRNA: 3'- -GAGGaAGGAcGAGaAGGCGAC-GGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 12908 | 0.68 | 0.870777 |
Target: 5'- gUCCUgacgauagggcUCCUGCUgggUCUGCUguucGCCGCGa -3' miRNA: 3'- gAGGA-----------AGGACGAga-AGGCGA----CGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 149214 | 0.68 | 0.870777 |
Target: 5'- gCUgCUgUCgCUGCUC--CCGCUGCCGCc -3' miRNA: 3'- -GAgGA-AG-GACGAGaaGGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 202783 | 0.68 | 0.884023 |
Target: 5'- uUCCUcuguUCCuUGCUCUUCuuucguaucaacaCGCUGCCGa- -3' miRNA: 3'- gAGGA----AGG-ACGAGAAG-------------GCGACGGUgc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 96990 | 0.68 | 0.884699 |
Target: 5'- gUCCgucgCgCUGCUgCgacgUCUGCUGCCGCu -3' miRNA: 3'- gAGGaa--G-GACGA-Ga---AGGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 162186 | 0.68 | 0.884699 |
Target: 5'- gUCUUcgCCgUGCcCUUCUGCUGCgGCGg -3' miRNA: 3'- gAGGAa-GG-ACGaGAAGGCGACGgUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 5292 | 0.67 | 0.897772 |
Target: 5'- gCUCCgUUCCUGU---UUCGUUGCCugGc -3' miRNA: 3'- -GAGG-AAGGACGagaAGGCGACGGugC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 65294 | 0.67 | 0.902757 |
Target: 5'- cCUCCUacUCCUGCUCcuuccCCGCguggugggaccgGCgGCGg -3' miRNA: 3'- -GAGGA--AGGACGAGaa---GGCGa-----------CGgUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 205306 | 0.67 | 0.903982 |
Target: 5'- aCUCg--CC-GCUCUucUCUGCUGUCACGa -3' miRNA: 3'- -GAGgaaGGaCGAGA--AGGCGACGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 73672 | 0.67 | 0.903982 |
Target: 5'- cCUCCUuUCCUcUUCUUucuugCUGCUGCCGCc -3' miRNA: 3'- -GAGGA-AGGAcGAGAA-----GGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 179580 | 0.67 | 0.909969 |
Target: 5'- uUCaCUUCUUGCUCUUCUucuuggGCUGCUg-- -3' miRNA: 3'- gAG-GAAGGACGAGAAGG------CGACGGugc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 151606 | 0.67 | 0.915732 |
Target: 5'- cCUCCUUCCUcCUCUUCuCGgucgGCgGCGu -3' miRNA: 3'- -GAGGAAGGAcGAGAAG-GCga--CGgUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 73705 | 0.66 | 0.92127 |
Target: 5'- --gCUUCCUcCUCcUCCGCcGCCGCu -3' miRNA: 3'- gagGAAGGAcGAGaAGGCGaCGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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