Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15770 | 5' | -56.6 | NC_004065.1 | + | 169558 | 0.69 | 0.824316 |
Target: 5'- gUCUcggUUUCUGCgcgCUguugCCGCUGUCGCGg -3' miRNA: 3'- gAGG---AAGGACGa--GAa---GGCGACGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 66348 | 0.7 | 0.766409 |
Target: 5'- gCUCCUUCUgcuuUGUaCUgaggccgcugcugccUCCGCUGCCGCu -3' miRNA: 3'- -GAGGAAGG----ACGaGA---------------AGGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 129387 | 0.7 | 0.753411 |
Target: 5'- -----cCCUGUUCUcgCCGCUGCCGCc -3' miRNA: 3'- gaggaaGGACGAGAa-GGCGACGGUGc -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 103450 | 0.72 | 0.676027 |
Target: 5'- -aCCUUCCUGCgCgugCUGCUgcGCCACGc -3' miRNA: 3'- gaGGAAGGACGaGaa-GGCGA--CGGUGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 185112 | 0.74 | 0.576618 |
Target: 5'- cCUCCUcuagaUCCgagGuCUCUUCUGCUGCCuccGCGa -3' miRNA: 3'- -GAGGA-----AGGa--C-GAGAAGGCGACGG---UGC- -5' |
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15770 | 5' | -56.6 | NC_004065.1 | + | 140637 | 1.09 | 0.003793 |
Target: 5'- uCUCCUUCCUGCUCUUCCGCUGCCACGa -3' miRNA: 3'- -GAGGAAGGACGAGAAGGCGACGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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