miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15770 5' -56.6 NC_004065.1 + 169558 0.69 0.824316
Target:  5'- gUCUcggUUUCUGCgcgCUguugCCGCUGUCGCGg -3'
miRNA:   3'- gAGG---AAGGACGa--GAa---GGCGACGGUGC- -5'
15770 5' -56.6 NC_004065.1 + 122244 0.66 0.936522
Target:  5'- gUCgUUCCUGUcg--CCGCUGCUGCc -3'
miRNA:   3'- gAGgAAGGACGagaaGGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 32181 0.66 0.936522
Target:  5'- uUCC-UCCUG-UCUUCCGUgUGUCGCu -3'
miRNA:   3'- gAGGaAGGACgAGAAGGCG-ACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 73705 0.66 0.92127
Target:  5'- --gCUUCCUcCUCcUCCGCcGCCGCu -3'
miRNA:   3'- gagGAAGGAcGAGaAGGCGaCGGUGc -5'
15770 5' -56.6 NC_004065.1 + 179580 0.67 0.909969
Target:  5'- uUCaCUUCUUGCUCUUCUucuuggGCUGCUg-- -3'
miRNA:   3'- gAG-GAAGGACGAGAAGG------CGACGGugc -5'
15770 5' -56.6 NC_004065.1 + 73672 0.67 0.903982
Target:  5'- cCUCCUuUCCUcUUCUUucuugCUGCUGCCGCc -3'
miRNA:   3'- -GAGGA-AGGAcGAGAA-----GGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 96990 0.68 0.884699
Target:  5'- gUCCgucgCgCUGCUgCgacgUCUGCUGCCGCu -3'
miRNA:   3'- gAGGaa--G-GACGA-Ga---AGGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 202783 0.68 0.884023
Target:  5'- uUCCUcuguUCCuUGCUCUUCuuucguaucaacaCGCUGCCGa- -3'
miRNA:   3'- gAGGA----AGG-ACGAGAAG-------------GCGACGGUgc -5'
15770 5' -56.6 NC_004065.1 + 12908 0.68 0.870777
Target:  5'- gUCCUgacgauagggcUCCUGCUgggUCUGCUguucGCCGCGa -3'
miRNA:   3'- gAGGA-----------AGGACGAga-AGGCGA----CGGUGC- -5'
15770 5' -56.6 NC_004065.1 + 149214 0.68 0.870777
Target:  5'- gCUgCUgUCgCUGCUC--CCGCUGCCGCc -3'
miRNA:   3'- -GAgGA-AG-GACGAGaaGGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 97114 0.68 0.848384
Target:  5'- uCUCC-UCCUcCUCcUCUGCUGuCCACa -3'
miRNA:   3'- -GAGGaAGGAcGAGaAGGCGAC-GGUGc -5'
15770 5' -56.6 NC_004065.1 + 65294 0.67 0.902757
Target:  5'- cCUCCUacUCCUGCUCcuuccCCGCguggugggaccgGCgGCGg -3'
miRNA:   3'- -GAGGA--AGGACGAGaa---GGCGa-----------CGgUGC- -5'
15770 5' -56.6 NC_004065.1 + 5292 0.67 0.897772
Target:  5'- gCUCCgUUCCUGU---UUCGUUGCCugGc -3'
miRNA:   3'- -GAGG-AAGGACGagaAGGCGACGGugC- -5'
15770 5' -56.6 NC_004065.1 + 162186 0.68 0.884699
Target:  5'- gUCUUcgCCgUGCcCUUCUGCUGCgGCGg -3'
miRNA:   3'- gAGGAa-GG-ACGaGAAGGCGACGgUGC- -5'
15770 5' -56.6 NC_004065.1 + 167381 0.69 0.840539
Target:  5'- uCUCCgccgCCaaUGCUgCUgucaaugCUGCUGCCGCGg -3'
miRNA:   3'- -GAGGaa--GG--ACGA-GAa------GGCGACGGUGC- -5'
15770 5' -56.6 NC_004065.1 + 66348 0.7 0.766409
Target:  5'- gCUCCUUCUgcuuUGUaCUgaggccgcugcugccUCCGCUGCCGCu -3'
miRNA:   3'- -GAGGAAGG----ACGaGA---------------AGGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 129387 0.7 0.753411
Target:  5'- -----cCCUGUUCUcgCCGCUGCCGCc -3'
miRNA:   3'- gaggaaGGACGAGAa-GGCGACGGUGc -5'
15770 5' -56.6 NC_004065.1 + 103450 0.72 0.676027
Target:  5'- -aCCUUCCUGCgCgugCUGCUgcGCCACGc -3'
miRNA:   3'- gaGGAAGGACGaGaa-GGCGA--CGGUGC- -5'
15770 5' -56.6 NC_004065.1 + 185112 0.74 0.576618
Target:  5'- cCUCCUcuagaUCCgagGuCUCUUCUGCUGCCuccGCGa -3'
miRNA:   3'- -GAGGA-----AGGa--C-GAGAAGGCGACGG---UGC- -5'
15770 5' -56.6 NC_004065.1 + 170038 0.66 0.94556
Target:  5'- cCUCCUUCaucaccggCUGCUCggCCGaCgaaGCCGCc -3'
miRNA:   3'- -GAGGAAG--------GACGAGaaGGC-Ga--CGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.