miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 3' -58.5 NC_004065.1 + 91694 0.66 0.879692
Target:  5'- aAACCUgucccugggugaggaGGCCUcgCAcgcgaUCAGgGCCGCGUCc -3'
miRNA:   3'- -UUGGA---------------CCGGGa-GU-----AGUUgCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 23291 0.66 0.876923
Target:  5'- uAGCCgcGGCCUUCGUUAuCGgCGUGUUg -3'
miRNA:   3'- -UUGGa-CCGGGAGUAGUuGCgGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 154198 0.66 0.869857
Target:  5'- cGACUgcgGGuCCCUCAUCuguCGUCGUGcCa -3'
miRNA:   3'- -UUGGa--CC-GGGAGUAGuu-GCGGCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 198358 0.66 0.869857
Target:  5'- cGCCggGGUCCUucgcCAggaaCAGCGCCGaCGUCc -3'
miRNA:   3'- uUGGa-CCGGGA----GUa---GUUGCGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 37955 0.66 0.862589
Target:  5'- -uUCUGGaUCUCGUCGcCGCCGUGUa -3'
miRNA:   3'- uuGGACCgGGAGUAGUuGCGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 199857 0.66 0.862589
Target:  5'- cGCCgcaGGCaCUCGUCggUGCCGCa-- -3'
miRNA:   3'- uUGGa--CCGgGAGUAGuuGCGGCGcag -5'
15771 3' -58.5 NC_004065.1 + 27146 0.66 0.862589
Target:  5'- gAGCCgGGUCCgagCAaCAcACGCCGCGg- -3'
miRNA:   3'- -UUGGaCCGGGa--GUaGU-UGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 1159 0.66 0.855125
Target:  5'- cGCCgcggUGGUCCccauugugUCGUCGGCGCCGCu-- -3'
miRNA:   3'- uUGG----ACCGGG--------AGUAGUUGCGGCGcag -5'
15771 3' -58.5 NC_004065.1 + 117151 0.66 0.853609
Target:  5'- gGGCCUGGCCCUgaGUCugccggacgaGCUGCuGUCc -3'
miRNA:   3'- -UUGGACCGGGAg-UAGuug-------CGGCG-CAG- -5'
15771 3' -58.5 NC_004065.1 + 146685 0.66 0.852848
Target:  5'- cGCCaGGCUCUgCGUuacccacacaugggCGACGCCGCGcUCg -3'
miRNA:   3'- uUGGaCCGGGA-GUA--------------GUUGCGGCGC-AG- -5'
15771 3' -58.5 NC_004065.1 + 198109 0.66 0.847471
Target:  5'- cGGCCacGCUgUCggCGacGCGCCGCGUCa -3'
miRNA:   3'- -UUGGacCGGgAGuaGU--UGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 205917 0.66 0.847471
Target:  5'- cGCCgaGGCCgaCGUCGGCGCCauggaCGUCc -3'
miRNA:   3'- uUGGa-CCGGgaGUAGUUGCGGc----GCAG- -5'
15771 3' -58.5 NC_004065.1 + 203972 0.66 0.847471
Target:  5'- aAAUC-GGCUCgcgguUCGACGCCGCGUg -3'
miRNA:   3'- -UUGGaCCGGGagu--AGUUGCGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 83304 0.66 0.847471
Target:  5'- cGACg-GaGCUCUCGUCGucgaGCGCgGCGUCg -3'
miRNA:   3'- -UUGgaC-CGGGAGUAGU----UGCGgCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 149871 0.67 0.838839
Target:  5'- -uUCgGGCCCgUCGUCAGCcgccucuGCCGCGcCa -3'
miRNA:   3'- uuGGaCCGGG-AGUAGUUG-------CGGCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 29169 0.67 0.838839
Target:  5'- cGCCcGcGCCCcCGUCGACGCCGaacuccaccggguCGUCc -3'
miRNA:   3'- uUGGaC-CGGGaGUAGUUGCGGC-------------GCAG- -5'
15771 3' -58.5 NC_004065.1 + 82980 0.67 0.831617
Target:  5'- uGACCUGGUCgcaGUCGACGggGCGUCg -3'
miRNA:   3'- -UUGGACCGGgagUAGUUGCggCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 78040 0.67 0.831617
Target:  5'- uACCUGGUCCUgCGUCAGguCGgCGUGaUCg -3'
miRNA:   3'- uUGGACCGGGA-GUAGUU--GCgGCGC-AG- -5'
15771 3' -58.5 NC_004065.1 + 62014 0.67 0.831617
Target:  5'- gAACC-GGCCCgagacgCGUCGACggaGCUGuCGUCg -3'
miRNA:   3'- -UUGGaCCGGGa-----GUAGUUG---CGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 128698 0.67 0.831617
Target:  5'- cGCCUGGCUCUgGuUCGGCuCCGCuUCa -3'
miRNA:   3'- uUGGACCGGGAgU-AGUUGcGGCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.