miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 3' -58.5 NC_004065.1 + 140260 1.08 0.002796
Target:  5'- gAACCUGGCCCUCAUCAACGCCGCGUCg -3'
miRNA:   3'- -UUGGACCGGGAGUAGUUGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 19986 0.79 0.235804
Target:  5'- cGCCUGGUCUaCAUCAACuGCCGCGUg -3'
miRNA:   3'- uUGGACCGGGaGUAGUUG-CGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 98460 0.76 0.331871
Target:  5'- cGACCUGguggucGCCCUgAUCAugGCCGUGUa -3'
miRNA:   3'- -UUGGAC------CGGGAgUAGUugCGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 108499 0.75 0.385662
Target:  5'- -uCgUGGUCCUCGUCGACGaCCGCGa- -3'
miRNA:   3'- uuGgACCGGGAGUAGUUGC-GGCGCag -5'
15771 3' -58.5 NC_004065.1 + 123177 0.74 0.444904
Target:  5'- --gCUGGCUCUcCAUCAGgGCCuGCGUCg -3'
miRNA:   3'- uugGACCGGGA-GUAGUUgCGG-CGCAG- -5'
15771 3' -58.5 NC_004065.1 + 35390 0.73 0.462747
Target:  5'- aGGCgUGGaCCgUCAUCGGCGCCGUGg- -3'
miRNA:   3'- -UUGgACC-GGgAGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 31645 0.73 0.471809
Target:  5'- aGACCUGGCCCacggCGUUGACGCCGa--- -3'
miRNA:   3'- -UUGGACCGGGa---GUAGUUGCGGCgcag -5'
15771 3' -58.5 NC_004065.1 + 86906 0.73 0.471809
Target:  5'- cGCCggucucGCCCUCggCGGCGCgCGCGUCg -3'
miRNA:   3'- uUGGac----CGGGAGuaGUUGCG-GCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 34751 0.73 0.480959
Target:  5'- cACCUGGCCCUCAguuuccCGCCGgGcCa -3'
miRNA:   3'- uUGGACCGGGAGUaguu--GCGGCgCaG- -5'
15771 3' -58.5 NC_004065.1 + 11095 0.73 0.480959
Target:  5'- cACCUGGUUCUgCGaacguuUCAACGaCCGCGUCg -3'
miRNA:   3'- uUGGACCGGGA-GU------AGUUGC-GGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 135836 0.72 0.508908
Target:  5'- cGAUCUGGCgaCCUCGUCGAUggguGUCGUGUCg -3'
miRNA:   3'- -UUGGACCG--GGAGUAGUUG----CGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 163367 0.72 0.508908
Target:  5'- gGGCCcggUGGCUCUcCAUCAGCGUcagCGCGUCc -3'
miRNA:   3'- -UUGG---ACCGGGA-GUAGUUGCG---GCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 204284 0.72 0.526959
Target:  5'- -cCCUGGUCCUCGUCGACgucuucgGCCGUuUCu -3'
miRNA:   3'- uuGGACCGGGAGUAGUUG-------CGGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 124844 0.72 0.546211
Target:  5'- cGCCUGGUCCaucgcgaUCAUCcGCGCCaCGUCc -3'
miRNA:   3'- uUGGACCGGG-------AGUAGuUGCGGcGCAG- -5'
15771 3' -58.5 NC_004065.1 + 222642 0.72 0.556897
Target:  5'- uACCgaggagGGCCCgCGUCAGCGCCccaCGUCc -3'
miRNA:   3'- uUGGa-----CCGGGaGUAGUUGCGGc--GCAG- -5'
15771 3' -58.5 NC_004065.1 + 57059 0.71 0.566662
Target:  5'- gGGCaaGGCCC-CGUCAACGUCGuUGUCa -3'
miRNA:   3'- -UUGgaCCGGGaGUAGUUGCGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 68997 0.71 0.576471
Target:  5'- cGACC-GGCCCcugcaCGUCGAUGCCGCcUCg -3'
miRNA:   3'- -UUGGaCCGGGa----GUAGUUGCGGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 202643 0.71 0.586317
Target:  5'- cGACCUGaGUgCUCAUCAcguuguCGCCGCGg- -3'
miRNA:   3'- -UUGGAC-CGgGAGUAGUu-----GCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 43326 0.71 0.586317
Target:  5'- cAUCUGGCCCgg--CGgggacgccccacGCGCCGCGUCc -3'
miRNA:   3'- uUGGACCGGGaguaGU------------UGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 146547 0.71 0.596194
Target:  5'- cGGCCU-GCCCgacaUCGUCGGCGUCGCGg- -3'
miRNA:   3'- -UUGGAcCGGG----AGUAGUUGCGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.