miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 3' -58.5 NC_004065.1 + 46129 0.67 0.831617
Target:  5'- cAGCgUGGCgcaCCUCAUCAACGguaCGCG-Ca -3'
miRNA:   3'- -UUGgACCG---GGAGUAGUUGCg--GCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 222784 0.67 0.82343
Target:  5'- uAGCCUGGCUCacaUgGUCGAUGUCGCa-- -3'
miRNA:   3'- -UUGGACCGGG---AgUAGUUGCGGCGcag -5'
15771 3' -58.5 NC_004065.1 + 193095 0.67 0.82343
Target:  5'- gGACCUGGaucucuCCCUCGagGAUGUCGUGcUCa -3'
miRNA:   3'- -UUGGACC------GGGAGUagUUGCGGCGC-AG- -5'
15771 3' -58.5 NC_004065.1 + 94956 0.67 0.82343
Target:  5'- cGCUgcggGGCCCgcUCcgCGGCuGCCGCGUa -3'
miRNA:   3'- uUGGa---CCGGG--AGuaGUUG-CGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 124882 0.67 0.815079
Target:  5'- uGCCcgGGUugcgcuCCUCgAUguGCGCCGCGUCc -3'
miRNA:   3'- uUGGa-CCG------GGAG-UAguUGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 152409 0.67 0.815079
Target:  5'- cGCCaGGUCC--GUCAGCGUCGUGUUg -3'
miRNA:   3'- uUGGaCCGGGagUAGUUGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 21748 0.67 0.806571
Target:  5'- -uCUUGGUaCgUCGUCAGCGCCuccucgGCGUCg -3'
miRNA:   3'- uuGGACCG-GgAGUAGUUGCGG------CGCAG- -5'
15771 3' -58.5 NC_004065.1 + 109986 0.67 0.797915
Target:  5'- -uCCUGGCgCUC-UgGACGCUGCGcCu -3'
miRNA:   3'- uuGGACCGgGAGuAgUUGCGGCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 111555 0.67 0.797915
Target:  5'- cACCUGGCaCUUCGUgAGCGgCGCcUCc -3'
miRNA:   3'- uUGGACCG-GGAGUAgUUGCgGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 152219 0.68 0.789117
Target:  5'- gAACCUGGCCCgCAUCAGCaacuacUCGCaGUUc -3'
miRNA:   3'- -UUGGACCGGGaGUAGUUGc-----GGCG-CAG- -5'
15771 3' -58.5 NC_004065.1 + 68773 0.68 0.780186
Target:  5'- gGugCUGGCggCCU--UCAAgGCCGUGUCg -3'
miRNA:   3'- -UugGACCG--GGAguAGUUgCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 137556 0.68 0.780186
Target:  5'- -cUCUGGCCCggCA-CAuCGCCGCGg- -3'
miRNA:   3'- uuGGACCGGGa-GUaGUuGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 160621 0.68 0.774766
Target:  5'- cACCUGGCgCCcCGUCGgcagcuguuccgccaGCGCCGUGaUCc -3'
miRNA:   3'- uUGGACCG-GGaGUAGU---------------UGCGGCGC-AG- -5'
15771 3' -58.5 NC_004065.1 + 204128 0.68 0.77113
Target:  5'- uGGCCUGGCCCgc--CGGgGCCGUGa- -3'
miRNA:   3'- -UUGGACCGGGaguaGUUgCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 111256 0.68 0.77113
Target:  5'- cGCCUcugCCUCGUCGGCGCCGUGa- -3'
miRNA:   3'- uUGGAccgGGAGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 198369 0.68 0.77113
Target:  5'- cGCCgggUGGUCggCGUCAACGCCGUGg- -3'
miRNA:   3'- uUGG---ACCGGgaGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 146601 0.68 0.761956
Target:  5'- uGGCCaucggGGCCgUCggCGGgGCCGUGUCu -3'
miRNA:   3'- -UUGGa----CCGGgAGuaGUUgCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 197040 0.68 0.752675
Target:  5'- cGGCCUGGUCCgcgaggccucCGUCAugcucCGCCGCGa- -3'
miRNA:   3'- -UUGGACCGGGa---------GUAGUu----GCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 7528 0.68 0.743293
Target:  5'- cGACCUGGCCCUCAguuuucCGAU-CCGC-UCc -3'
miRNA:   3'- -UUGGACCGGGAGUa-----GUUGcGGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 146858 0.69 0.724264
Target:  5'- cGCCUGGUCUgCAUCGGCGCgugaaCGCGg- -3'
miRNA:   3'- uUGGACCGGGaGUAGUUGCG-----GCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.