miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 3' -58.5 NC_004065.1 + 1159 0.66 0.855125
Target:  5'- cGCCgcggUGGUCCccauugugUCGUCGGCGCCGCu-- -3'
miRNA:   3'- uUGG----ACCGGG--------AGUAGUUGCGGCGcag -5'
15771 3' -58.5 NC_004065.1 + 6893 0.69 0.69518
Target:  5'- gAugCUcGCCCUCAUCuACGCgGCGg- -3'
miRNA:   3'- -UugGAcCGGGAGUAGuUGCGgCGCag -5'
15771 3' -58.5 NC_004065.1 + 7528 0.68 0.743293
Target:  5'- cGACCUGGCCCUCAguuuucCGAU-CCGC-UCc -3'
miRNA:   3'- -UUGGACCGGGAGUa-----GUUGcGGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 11095 0.73 0.480959
Target:  5'- cACCUGGUUCUgCGaacguuUCAACGaCCGCGUCg -3'
miRNA:   3'- uUGGACCGGGA-GU------AGUUGC-GGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 19986 0.79 0.235804
Target:  5'- cGCCUGGUCUaCAUCAACuGCCGCGUg -3'
miRNA:   3'- uUGGACCGGGaGUAGUUG-CGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 21748 0.67 0.806571
Target:  5'- -uCUUGGUaCgUCGUCAGCGCCuccucgGCGUCg -3'
miRNA:   3'- uuGGACCG-GgAGUAGUUGCGG------CGCAG- -5'
15771 3' -58.5 NC_004065.1 + 23291 0.66 0.876923
Target:  5'- uAGCCgcGGCCUUCGUUAuCGgCGUGUUg -3'
miRNA:   3'- -UUGGa-CCGGGAGUAGUuGCgGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 27146 0.66 0.862589
Target:  5'- gAGCCgGGUCCgagCAaCAcACGCCGCGg- -3'
miRNA:   3'- -UUGGaCCGGGa--GUaGU-UGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 29169 0.67 0.838839
Target:  5'- cGCCcGcGCCCcCGUCGACGCCGaacuccaccggguCGUCc -3'
miRNA:   3'- uUGGaC-CGGGaGUAGUUGCGGC-------------GCAG- -5'
15771 3' -58.5 NC_004065.1 + 31645 0.73 0.471809
Target:  5'- aGACCUGGCCCacggCGUUGACGCCGa--- -3'
miRNA:   3'- -UUGGACCGGGa---GUAGUUGCGGCgcag -5'
15771 3' -58.5 NC_004065.1 + 34751 0.73 0.480959
Target:  5'- cACCUGGCCCUCAguuuccCGCCGgGcCa -3'
miRNA:   3'- uUGGACCGGGAGUaguu--GCGGCgCaG- -5'
15771 3' -58.5 NC_004065.1 + 35390 0.73 0.462747
Target:  5'- aGGCgUGGaCCgUCAUCGGCGCCGUGg- -3'
miRNA:   3'- -UUGgACC-GGgAGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 37955 0.66 0.862589
Target:  5'- -uUCUGGaUCUCGUCGcCGCCGUGUa -3'
miRNA:   3'- uuGGACCgGGAGUAGUuGCGGCGCAg -5'
15771 3' -58.5 NC_004065.1 + 43326 0.71 0.586317
Target:  5'- cAUCUGGCCCgg--CGgggacgccccacGCGCCGCGUCc -3'
miRNA:   3'- uUGGACCGGGaguaGU------------UGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 46129 0.67 0.831617
Target:  5'- cAGCgUGGCgcaCCUCAUCAACGguaCGCG-Ca -3'
miRNA:   3'- -UUGgACCG---GGAGUAGUUGCg--GCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 57059 0.71 0.566662
Target:  5'- gGGCaaGGCCC-CGUCAACGUCGuUGUCa -3'
miRNA:   3'- -UUGgaCCGGGaGUAGUUGCGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 62014 0.67 0.831617
Target:  5'- gAACC-GGCCCgagacgCGUCGACggaGCUGuCGUCg -3'
miRNA:   3'- -UUGGaCCGGGa-----GUAGUUG---CGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 68773 0.68 0.780186
Target:  5'- gGugCUGGCggCCU--UCAAgGCCGUGUCg -3'
miRNA:   3'- -UugGACCG--GGAguAGUUgCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 68997 0.71 0.576471
Target:  5'- cGACC-GGCCCcugcaCGUCGAUGCCGCcUCg -3'
miRNA:   3'- -UUGGaCCGGGa----GUAGUUGCGGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 78040 0.67 0.831617
Target:  5'- uACCUGGUCCUgCGUCAGguCGgCGUGaUCg -3'
miRNA:   3'- uUGGACCGGGA-GUAGUU--GCgGCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.