miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 3' -58.5 NC_004065.1 + 124882 0.67 0.815079
Target:  5'- uGCCcgGGUugcgcuCCUCgAUguGCGCCGCGUCc -3'
miRNA:   3'- uUGGa-CCG------GGAG-UAguUGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 124097 0.7 0.665648
Target:  5'- gGugCaGGCCCaUCcggcUCAGCGCCGCGaUCg -3'
miRNA:   3'- -UugGaCCGGG-AGu---AGUUGCGGCGC-AG- -5'
15771 3' -58.5 NC_004065.1 + 164511 0.69 0.693222
Target:  5'- aAACCUguaugugagauacGGCCCuUCAUCGAcauagcuCGCUGUGUCg -3'
miRNA:   3'- -UUGGA-------------CCGGG-AGUAGUU-------GCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 111256 0.68 0.77113
Target:  5'- cGCCUcugCCUCGUCGGCGCCGUGa- -3'
miRNA:   3'- uUGGAccgGGAGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 68773 0.68 0.780186
Target:  5'- gGugCUGGCggCCU--UCAAgGCCGUGUCg -3'
miRNA:   3'- -UugGACCG--GGAguAGUUgCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 152219 0.68 0.789117
Target:  5'- gAACCUGGCCCgCAUCAGCaacuacUCGCaGUUc -3'
miRNA:   3'- -UUGGACCGGGaGUAGUUGc-----GGCG-CAG- -5'
15771 3' -58.5 NC_004065.1 + 109986 0.67 0.797915
Target:  5'- -uCCUGGCgCUC-UgGACGCUGCGcCu -3'
miRNA:   3'- uuGGACCGgGAGuAgUUGCGGCGCaG- -5'
15771 3' -58.5 NC_004065.1 + 111555 0.67 0.797915
Target:  5'- cACCUGGCaCUUCGUgAGCGgCGCcUCc -3'
miRNA:   3'- uUGGACCG-GGAGUAgUUGCgGCGcAG- -5'
15771 3' -58.5 NC_004065.1 + 21748 0.67 0.806571
Target:  5'- -uCUUGGUaCgUCGUCAGCGCCuccucgGCGUCg -3'
miRNA:   3'- uuGGACCG-GgAGUAGUUGCGG------CGCAG- -5'
15771 3' -58.5 NC_004065.1 + 127924 0.7 0.635885
Target:  5'- cACCUcGGUCCggcCAUCGcCGcCCGCGUCg -3'
miRNA:   3'- uUGGA-CCGGGa--GUAGUuGC-GGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 149178 0.71 0.613039
Target:  5'- uGGCCUGGCgCUCGUCcgauccgcucgcucGGCGCUGCugcuGUCg -3'
miRNA:   3'- -UUGGACCGgGAGUAG--------------UUGCGGCG----CAG- -5'
15771 3' -58.5 NC_004065.1 + 146547 0.71 0.596194
Target:  5'- cGGCCU-GCCCgacaUCGUCGGCGUCGCGg- -3'
miRNA:   3'- -UUGGAcCGGG----AGUAGUUGCGGCGCag -5'
15771 3' -58.5 NC_004065.1 + 123177 0.74 0.444904
Target:  5'- --gCUGGCUCUcCAUCAGgGCCuGCGUCg -3'
miRNA:   3'- uugGACCGGGA-GUAGUUgCGG-CGCAG- -5'
15771 3' -58.5 NC_004065.1 + 31645 0.73 0.471809
Target:  5'- aGACCUGGCCCacggCGUUGACGCCGa--- -3'
miRNA:   3'- -UUGGACCGGGa---GUAGUUGCGGCgcag -5'
15771 3' -58.5 NC_004065.1 + 135836 0.72 0.508908
Target:  5'- cGAUCUGGCgaCCUCGUCGAUggguGUCGUGUCg -3'
miRNA:   3'- -UUGGACCG--GGAGUAGUUG----CGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 124844 0.72 0.546211
Target:  5'- cGCCUGGUCCaucgcgaUCAUCcGCGCCaCGUCc -3'
miRNA:   3'- uUGGACCGGG-------AGUAGuUGCGGcGCAG- -5'
15771 3' -58.5 NC_004065.1 + 222642 0.72 0.556897
Target:  5'- uACCgaggagGGCCCgCGUCAGCGCCccaCGUCc -3'
miRNA:   3'- uUGGa-----CCGGGaGUAGUUGCGGc--GCAG- -5'
15771 3' -58.5 NC_004065.1 + 57059 0.71 0.566662
Target:  5'- gGGCaaGGCCC-CGUCAACGUCGuUGUCa -3'
miRNA:   3'- -UUGgaCCGGGaGUAGUUGCGGC-GCAG- -5'
15771 3' -58.5 NC_004065.1 + 43326 0.71 0.586317
Target:  5'- cAUCUGGCCCgg--CGgggacgccccacGCGCCGCGUCc -3'
miRNA:   3'- uUGGACCGGGaguaGU------------UGCGGCGCAG- -5'
15771 3' -58.5 NC_004065.1 + 202643 0.71 0.586317
Target:  5'- cGACCUGaGUgCUCAUCAcguuguCGCCGCGg- -3'
miRNA:   3'- -UUGGAC-CGgGAGUAGUu-----GCGGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.