miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 5' -58.4 NC_004065.1 + 121399 0.66 0.915323
Target:  5'- aCGAuCAgcaccagcuGCCCgCCgGACGGCGGCuucaGCGGa -3'
miRNA:   3'- aGCU-GU---------UGGG-GGaCUGCUGCCG----CGUC- -5'
15771 5' -58.4 NC_004065.1 + 205422 0.66 0.915323
Target:  5'- uUCG-CAACa-CC-GGCGGCGGCGguGg -3'
miRNA:   3'- -AGCuGUUGggGGaCUGCUGCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 85527 0.66 0.915323
Target:  5'- uUCGGCAACagcuuuuUCgUGAaGACGGCGCAc -3'
miRNA:   3'- -AGCUGUUGg------GGgACUgCUGCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 190288 0.66 0.915323
Target:  5'- cUCGAUAuacgcGCCCCCUGGCucUGGUaGguGg -3'
miRNA:   3'- -AGCUGU-----UGGGGGACUGcuGCCG-CguC- -5'
15771 5' -58.4 NC_004065.1 + 1018 0.66 0.915323
Target:  5'- aCGAgCGugCCCCgca-GGCaGGCGCAGc -3'
miRNA:   3'- aGCU-GUugGGGGacugCUG-CCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 88922 0.66 0.909686
Target:  5'- gUCGGCGAUgCCgCUGAa---GGCGCGGc -3'
miRNA:   3'- -AGCUGUUGgGG-GACUgcugCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 97147 0.66 0.909686
Target:  5'- -aGGCGACCCUCUGGCc---GCGCAa -3'
miRNA:   3'- agCUGUUGGGGGACUGcugcCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 114982 0.66 0.909686
Target:  5'- cCGuu-GCCCucggcCCUGGCGGCcGCGCGGa -3'
miRNA:   3'- aGCuguUGGG-----GGACUGCUGcCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 196793 0.66 0.909686
Target:  5'- aUGAuCAGCCCCaC-GACGA-GGCGguGg -3'
miRNA:   3'- aGCU-GUUGGGG-GaCUGCUgCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 127111 0.66 0.909686
Target:  5'- gUCGcCGuccaguucuCCCCCaucgcGGCGGCGGCGCu- -3'
miRNA:   3'- -AGCuGUu--------GGGGGa----CUGCUGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 192138 0.66 0.909686
Target:  5'- gCGACGGCCgCCaGACGGCcuuccGCGCuGa -3'
miRNA:   3'- aGCUGUUGGgGGaCUGCUGc----CGCGuC- -5'
15771 5' -58.4 NC_004065.1 + 143110 0.66 0.909686
Target:  5'- uUCGACGcgcgcGCCgCCgagGGCGAgacCGGCGCc- -3'
miRNA:   3'- -AGCUGU-----UGGgGGa--CUGCU---GCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 60681 0.66 0.909686
Target:  5'- -aGACGGCCCaCCagGGCGAgacggugaUGGCGCu- -3'
miRNA:   3'- agCUGUUGGG-GGa-CUGCU--------GCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 33639 0.66 0.909686
Target:  5'- gUCGAUgAGCUCgUUGACGAgcCGGCGgAGa -3'
miRNA:   3'- -AGCUG-UUGGGgGACUGCU--GCCGCgUC- -5'
15771 5' -58.4 NC_004065.1 + 194378 0.66 0.90911
Target:  5'- aUCGGCGGCCggucuucguCCCUGugGggacagaGCGGCGgGc -3'
miRNA:   3'- -AGCUGUUGG---------GGGACugC-------UGCCGCgUc -5'
15771 5' -58.4 NC_004065.1 + 123407 0.66 0.903836
Target:  5'- aUCGGuCAGggCCCUGAUGGaguCGGCGCAc -3'
miRNA:   3'- -AGCU-GUUggGGGACUGCU---GCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 189369 0.66 0.903836
Target:  5'- aUCGcauCAACUCgCUG-CGACGGCGUc- -3'
miRNA:   3'- -AGCu--GUUGGGgGACuGCUGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 77962 0.66 0.903836
Target:  5'- gUGACGucgaGCCCCgaGACGcUGGcCGCGGc -3'
miRNA:   3'- aGCUGU----UGGGGgaCUGCuGCC-GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 169924 0.66 0.903836
Target:  5'- cCGGCcgcuucuaccccGACCUCUUcgacGACGACGaGCGCGGc -3'
miRNA:   3'- aGCUG------------UUGGGGGA----CUGCUGC-CGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 67486 0.66 0.903836
Target:  5'- gCGACGACUucaCCgaGGCGAucuCGGCGCu- -3'
miRNA:   3'- aGCUGUUGG---GGgaCUGCU---GCCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.