Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15771 | 5' | -58.4 | NC_004065.1 | + | 121399 | 0.66 | 0.915323 |
Target: 5'- aCGAuCAgcaccagcuGCCCgCCgGACGGCGGCuucaGCGGa -3' miRNA: 3'- aGCU-GU---------UGGG-GGaCUGCUGCCG----CGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 119498 | 0.66 | 0.897774 |
Target: 5'- cCGAgu-UCaCCCUGGCGaucagcauggGCGGCGCGGg -3' miRNA: 3'- aGCUguuGG-GGGACUGC----------UGCCGCGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 90555 | 0.66 | 0.884369 |
Target: 5'- cCGACGGCCCCCucgaaccUGAUGGucuucuUGGCGUc- -3' miRNA: 3'- aGCUGUUGGGGG-------ACUGCU------GCCGCGuc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 70509 | 0.66 | 0.897774 |
Target: 5'- aUGGCGGCgCCCUucuCGACGGagcuGCAGg -3' miRNA: 3'- aGCUGUUGgGGGAcu-GCUGCCg---CGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 62603 | 0.66 | 0.885028 |
Target: 5'- gCGcCGccGCCCCCgc-CGGCGGCaGCAGc -3' miRNA: 3'- aGCuGU--UGGGGGacuGCUGCCG-CGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 77962 | 0.66 | 0.903836 |
Target: 5'- gUGACGucgaGCCCCgaGACGcUGGcCGCGGc -3' miRNA: 3'- aGCUGU----UGGGGgaCUGCuGCC-GCGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 70223 | 0.66 | 0.897774 |
Target: 5'- aCGA-GACCUgCUGACGAUcGCGCAc -3' miRNA: 3'- aGCUgUUGGGgGACUGCUGcCGCGUc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 143110 | 0.66 | 0.909686 |
Target: 5'- uUCGACGcgcgcGCCgCCgagGGCGAgacCGGCGCc- -3' miRNA: 3'- -AGCUGU-----UGGgGGa--CUGCU---GCCGCGuc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 192138 | 0.66 | 0.909686 |
Target: 5'- gCGACGGCCgCCaGACGGCcuuccGCGCuGa -3' miRNA: 3'- aGCUGUUGGgGGaCUGCUGc----CGCGuC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 70085 | 0.66 | 0.897774 |
Target: 5'- -aGGCGcggACCCCgaGGCGACGaGCaGCAc -3' miRNA: 3'- agCUGU---UGGGGgaCUGCUGC-CG-CGUc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 205422 | 0.66 | 0.915323 |
Target: 5'- uUCG-CAACa-CC-GGCGGCGGCGguGg -3' miRNA: 3'- -AGCuGUUGggGGaCUGCUGCCGCguC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 194378 | 0.66 | 0.90911 |
Target: 5'- aUCGGCGGCCggucuucguCCCUGugGggacagaGCGGCGgGc -3' miRNA: 3'- -AGCUGUUGG---------GGGACugC-------UGCCGCgUc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 127111 | 0.66 | 0.909686 |
Target: 5'- gUCGcCGuccaguucuCCCCCaucgcGGCGGCGGCGCu- -3' miRNA: 3'- -AGCuGUu--------GGGGGa----CUGCUGCCGCGuc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 33639 | 0.66 | 0.909686 |
Target: 5'- gUCGAUgAGCUCgUUGACGAgcCGGCGgAGa -3' miRNA: 3'- -AGCUG-UUGGGgGACUGCU--GCCGCgUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 60681 | 0.66 | 0.909686 |
Target: 5'- -aGACGGCCCaCCagGGCGAgacggugaUGGCGCu- -3' miRNA: 3'- agCUGUUGGG-GGa-CUGCU--------GCCGCGuc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 121622 | 0.66 | 0.885028 |
Target: 5'- -gGGCAggauGCCCCCgagGAUGGCGuugaGCGCGu -3' miRNA: 3'- agCUGU----UGGGGGa--CUGCUGC----CGCGUc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 190288 | 0.66 | 0.915323 |
Target: 5'- cUCGAUAuacgcGCCCCCUGGCucUGGUaGguGg -3' miRNA: 3'- -AGCUGU-----UGGGGGACUGcuGCCG-CguC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 1018 | 0.66 | 0.915323 |
Target: 5'- aCGAgCGugCCCCgca-GGCaGGCGCAGc -3' miRNA: 3'- aGCU-GUugGGGGacugCUG-CCGCGUC- -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 91358 | 0.66 | 0.897774 |
Target: 5'- aCGACGugCCCCguguacucGGCGGgGGCGa-- -3' miRNA: 3'- aGCUGUugGGGGa-------CUGCUgCCGCguc -5' |
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15771 | 5' | -58.4 | NC_004065.1 | + | 196793 | 0.66 | 0.909686 |
Target: 5'- aUGAuCAGCCCCaC-GACGA-GGCGguGg -3' miRNA: 3'- aGCU-GUUGGGG-GaCUGCUgCCGCguC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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