miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 5' -58.4 NC_004065.1 + 140294 1.09 0.00298
Target:  5'- gUCGACAACCCCCUGACGACGGCGCAGa -3'
miRNA:   3'- -AGCUGUUGGGGGACUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 131183 0.82 0.168758
Target:  5'- aUGAcCGACCCCCUGAcauCGGCGGCGCGa -3'
miRNA:   3'- aGCU-GUUGGGGGACU---GCUGCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 28648 0.79 0.251568
Target:  5'- gUCGACGuggcACCCCCcGGCGA-GGCGCAGc -3'
miRNA:   3'- -AGCUGU----UGGGGGaCUGCUgCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 202245 0.79 0.281613
Target:  5'- -gGGCAggagGCCCuCCaGACGGCGGCGCAGc -3'
miRNA:   3'- agCUGU----UGGG-GGaCUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 19020 0.76 0.388483
Target:  5'- aUCGACGACUCCgaaggguugGACGACGGCgGCGGu -3'
miRNA:   3'- -AGCUGUUGGGGga-------CUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 99391 0.76 0.412822
Target:  5'- gCGugGGCUgCCUGGCGGCGgGCGCGu -3'
miRNA:   3'- aGCugUUGGgGGACUGCUGC-CGCGUc -5'
15771 5' -58.4 NC_004065.1 + 30858 0.75 0.446694
Target:  5'- aCGACGACCagCCUGuCGACGGCGgGu -3'
miRNA:   3'- aGCUGUUGGg-GGACuGCUGCCGCgUc -5'
15771 5' -58.4 NC_004065.1 + 131162 0.75 0.446694
Target:  5'- aCGACGACCCCCguucCGGCaGCGCAc -3'
miRNA:   3'- aGCUGUUGGGGGacu-GCUGcCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 57455 0.75 0.455402
Target:  5'- uUCGAC-GCCgUCgUGGCGAUGGCGCGGc -3'
miRNA:   3'- -AGCUGuUGGgGG-ACUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 24759 0.75 0.464201
Target:  5'- -gGGCGGCCCCCcGuuGGcCGGCGCGGg -3'
miRNA:   3'- agCUGUUGGGGGaCugCU-GCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 63043 0.74 0.482059
Target:  5'- aCG-UAACCUgCUGGgGGCGGCGCAGu -3'
miRNA:   3'- aGCuGUUGGGgGACUgCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 93819 0.74 0.482059
Target:  5'- cCGGCGACUggCUGGUGACGGCGCGGa -3'
miRNA:   3'- aGCUGUUGGggGACUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 119811 0.74 0.491112
Target:  5'- cCGGCGaaGCCCUCUucccucucgacgGGCGGCGGCGCGu -3'
miRNA:   3'- aGCUGU--UGGGGGA------------CUGCUGCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 24515 0.73 0.518724
Target:  5'- gCGcCGGCCCCaaGAUGGCGGCgGCAGc -3'
miRNA:   3'- aGCuGUUGGGGgaCUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 132325 0.73 0.537469
Target:  5'- -gGACAGCCCg--GGCGGCGGCgGCAGc -3'
miRNA:   3'- agCUGUUGGGggaCUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 35238 0.73 0.544086
Target:  5'- cUCGACGAUCgCCCUGcgcgacccggucucGgGACGGCGCGa -3'
miRNA:   3'- -AGCUGUUGG-GGGAC--------------UgCUGCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 38198 0.73 0.546929
Target:  5'- uUCGGCAucaugACCCCCgugcgGAgGACGG-GCGGg -3'
miRNA:   3'- -AGCUGU-----UGGGGGa----CUgCUGCCgCGUC- -5'
15771 5' -58.4 NC_004065.1 + 29556 0.73 0.546929
Target:  5'- gUCGGCAucaggccgcGCUCCCgcuaucUGACGGCGGcCGCGGu -3'
miRNA:   3'- -AGCUGU---------UGGGGG------ACUGCUGCC-GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 101393 0.73 0.56313
Target:  5'- aCGGCggUCCCCUGAccuccgccaacgacCGugGGgGCGGc -3'
miRNA:   3'- aGCUGuuGGGGGACU--------------GCugCCgCGUC- -5'
15771 5' -58.4 NC_004065.1 + 59551 0.73 0.566002
Target:  5'- cCGAaGACCCCCcgaagccgaUGGCGACGG-GCAGc -3'
miRNA:   3'- aGCUgUUGGGGG---------ACUGCUGCCgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.