miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 5' -58.4 NC_004065.1 + 119498 0.66 0.897774
Target:  5'- cCGAgu-UCaCCCUGGCGaucagcauggGCGGCGCGGg -3'
miRNA:   3'- aGCUguuGG-GGGACUGC----------UGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 70509 0.66 0.897774
Target:  5'- aUGGCGGCgCCCUucuCGACGGagcuGCAGg -3'
miRNA:   3'- aGCUGUUGgGGGAcu-GCUGCCg---CGUC- -5'
15771 5' -58.4 NC_004065.1 + 133885 0.66 0.897774
Target:  5'- gCG-CGACCCCCacgGACGACGugaucauggaGUGCGa -3'
miRNA:   3'- aGCuGUUGGGGGa--CUGCUGC----------CGCGUc -5'
15771 5' -58.4 NC_004065.1 + 67489 0.66 0.897774
Target:  5'- cUCGAgAGCCCguccgagaCCUGGCccGGCGGCucguGCGGa -3'
miRNA:   3'- -AGCUgUUGGG--------GGACUG--CUGCCG----CGUC- -5'
15771 5' -58.4 NC_004065.1 + 187008 0.66 0.897774
Target:  5'- aUCGAgCGAgCaaaCUguuagUGGCGGCGGCGCGGc -3'
miRNA:   3'- -AGCU-GUUgGg--GG-----ACUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 2173 0.66 0.897774
Target:  5'- cCGugAucuCCCCCaGACGACGaucUGCGGa -3'
miRNA:   3'- aGCugUu--GGGGGaCUGCUGCc--GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 70085 0.66 0.897774
Target:  5'- -aGGCGcggACCCCgaGGCGACGaGCaGCAc -3'
miRNA:   3'- agCUGU---UGGGGgaCUGCUGC-CG-CGUc -5'
15771 5' -58.4 NC_004065.1 + 70223 0.66 0.897774
Target:  5'- aCGA-GACCUgCUGACGAUcGCGCAc -3'
miRNA:   3'- aGCUgUUGGGgGACUGCUGcCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 91358 0.66 0.897774
Target:  5'- aCGACGugCCCCguguacucGGCGGgGGCGa-- -3'
miRNA:   3'- aGCUGUugGGGGa-------CUGCUgCCGCguc -5'
15771 5' -58.4 NC_004065.1 + 116615 0.66 0.897774
Target:  5'- gCG-CAGCUCCCUGgccACGACGuCGCGa -3'
miRNA:   3'- aGCuGUUGGGGGAC---UGCUGCcGCGUc -5'
15771 5' -58.4 NC_004065.1 + 87582 0.66 0.897156
Target:  5'- cUCGAUcGCCuucaugaCCCUGAgGAgcCGGCGCGc -3'
miRNA:   3'- -AGCUGuUGG-------GGGACUgCU--GCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 7305 0.66 0.894037
Target:  5'- gCGAgGAgCUCCUGACGAucgagccggugguacCGGaCGCGGc -3'
miRNA:   3'- aGCUgUUgGGGGACUGCU---------------GCC-GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 126215 0.66 0.891504
Target:  5'- aCGACGAUUCCa--GCGAgaaCGGCGCGGc -3'
miRNA:   3'- aGCUGUUGGGGgacUGCU---GCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 94618 0.66 0.891504
Target:  5'- cCGAUcGgCUCCUGACGGggucgGGCGCGGc -3'
miRNA:   3'- aGCUGuUgGGGGACUGCUg----CCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 162159 0.66 0.891504
Target:  5'- cUGAuCGGCCgCC-GGCuGCGGCGCAGc -3'
miRNA:   3'- aGCU-GUUGGgGGaCUGcUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 197417 0.66 0.885028
Target:  5'- aCGACGagcGCCCgCUGGCcggcuucuACGGCGaCAGg -3'
miRNA:   3'- aGCUGU---UGGGgGACUGc-------UGCCGC-GUC- -5'
15771 5' -58.4 NC_004065.1 + 110794 0.66 0.885028
Target:  5'- cCGACGAUCUaCCUGACGcuGCGGUacGCGa -3'
miRNA:   3'- aGCUGUUGGG-GGACUGC--UGCCG--CGUc -5'
15771 5' -58.4 NC_004065.1 + 62603 0.66 0.885028
Target:  5'- gCGcCGccGCCCCCgc-CGGCGGCaGCAGc -3'
miRNA:   3'- aGCuGU--UGGGGGacuGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 79305 0.66 0.885028
Target:  5'- gUCGACGGCCUgggCCUcccaccGGCGGCGguucgugcGCGCGGa -3'
miRNA:   3'- -AGCUGUUGGG---GGA------CUGCUGC--------CGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 121622 0.66 0.885028
Target:  5'- -gGGCAggauGCCCCCgagGAUGGCGuugaGCGCGu -3'
miRNA:   3'- agCUGU----UGGGGGa--CUGCUGC----CGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.