miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 5' -58.4 NC_004065.1 + 433 0.69 0.748351
Target:  5'- -gGugAACCCCCUGGagcCGcccucGCGGCGUAa -3'
miRNA:   3'- agCugUUGGGGGACU---GC-----UGCCGCGUc -5'
15771 5' -58.4 NC_004065.1 + 1018 0.66 0.915323
Target:  5'- aCGAgCGugCCCCgca-GGCaGGCGCAGc -3'
miRNA:   3'- aGCU-GUugGGGGacugCUG-CCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 1791 0.69 0.775451
Target:  5'- gCGACAAUCCCgguCUGaacGCGGCGGCgaucGCGGu -3'
miRNA:   3'- aGCUGUUGGGG---GAC---UGCUGCCG----CGUC- -5'
15771 5' -58.4 NC_004065.1 + 2173 0.66 0.897774
Target:  5'- cCGugAucuCCCCCaGACGACGaucUGCGGa -3'
miRNA:   3'- aGCugUu--GGGGGaCUGCUGCc--GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 7305 0.66 0.894037
Target:  5'- gCGAgGAgCUCCUGACGAucgagccggugguacCGGaCGCGGc -3'
miRNA:   3'- aGCUgUUgGGGGACUGCU---------------GCC-GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 8741 0.68 0.834282
Target:  5'- gUGACGACCggaggCCgUGGUGGCGGCgGCAGg -3'
miRNA:   3'- aGCUGUUGG-----GGgACUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 18515 0.67 0.857142
Target:  5'- cCGACGACCCUCaGAgccgaaccCGACGGUuCGGa -3'
miRNA:   3'- aGCUGUUGGGGGaCU--------GCUGCCGcGUC- -5'
15771 5' -58.4 NC_004065.1 + 19020 0.76 0.388483
Target:  5'- aUCGACGACUCCgaaggguugGACGACGGCgGCGGu -3'
miRNA:   3'- -AGCUGUUGGGGga-------CUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 22895 0.69 0.792951
Target:  5'- gUCG-CAGCCUCCcaacgcggucagUGGCGGCGGUcgGCGGu -3'
miRNA:   3'- -AGCuGUUGGGGG------------ACUGCUGCCG--CGUC- -5'
15771 5' -58.4 NC_004065.1 + 24515 0.73 0.518724
Target:  5'- gCGcCGGCCCCaaGAUGGCGGCgGCAGc -3'
miRNA:   3'- aGCuGUUGGGGgaCUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 24759 0.75 0.464201
Target:  5'- -gGGCGGCCCCCcGuuGGcCGGCGCGGg -3'
miRNA:   3'- agCUGUUGGGGGaCugCU-GCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 28648 0.79 0.251568
Target:  5'- gUCGACGuggcACCCCCcGGCGA-GGCGCAGc -3'
miRNA:   3'- -AGCUGU----UGGGGGaCUGCUgCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 29556 0.73 0.546929
Target:  5'- gUCGGCAucaggccgcGCUCCCgcuaucUGACGGCGGcCGCGGu -3'
miRNA:   3'- -AGCUGU---------UGGGGG------ACUGCUGCC-GCGUC- -5'
15771 5' -58.4 NC_004065.1 + 29961 0.71 0.68226
Target:  5'- uUCGGgGACCggUgCUGGCGGCGGCGgCGGc -3'
miRNA:   3'- -AGCUgUUGG--GgGACUGCUGCCGC-GUC- -5'
15771 5' -58.4 NC_004065.1 + 30004 0.72 0.604605
Target:  5'- aCGGCAccugCCCCUGACGACcGCGguGc -3'
miRNA:   3'- aGCUGUug--GGGGACUGCUGcCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 30059 0.69 0.766523
Target:  5'- gCGGCAGCguuaUCgUUGAUGGCGGCGguGg -3'
miRNA:   3'- aGCUGUUG----GGgGACUGCUGCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 30174 0.7 0.72981
Target:  5'- cCGACGAgUgCCUG-CGGCGGUGguGg -3'
miRNA:   3'- aGCUGUUgGgGGACuGCUGCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 30858 0.75 0.446694
Target:  5'- aCGACGACCagCCUGuCGACGGCGgGu -3'
miRNA:   3'- aGCUGUUGGg-GGACuGCUGCCGCgUc -5'
15771 5' -58.4 NC_004065.1 + 31878 0.69 0.792951
Target:  5'- -aGGCAuucGCCaCCCaUGGCGGCGGCGa-- -3'
miRNA:   3'- agCUGU---UGG-GGG-ACUGCUGCCGCguc -5'
15771 5' -58.4 NC_004065.1 + 31898 0.68 0.834282
Target:  5'- cUCGAgAGCgggCCUGACG-CGGCGCGu -3'
miRNA:   3'- -AGCUgUUGgg-GGACUGCuGCCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.