miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15771 5' -58.4 NC_004065.1 + 64924 0.69 0.766523
Target:  5'- -gGACGccGCCUCagaGACGACGGCGCc- -3'
miRNA:   3'- agCUGU--UGGGGga-CUGCUGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 29961 0.71 0.68226
Target:  5'- uUCGGgGACCggUgCUGGCGGCGGCGgCGGc -3'
miRNA:   3'- -AGCUgUUGG--GgGACUGCUGCCGC-GUC- -5'
15771 5' -58.4 NC_004065.1 + 186569 0.7 0.710964
Target:  5'- gCGACAACgucuaCaCCgagGACGGCGGCGCu- -3'
miRNA:   3'- aGCUGUUGg----G-GGa--CUGCUGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 152900 0.7 0.720421
Target:  5'- cCG-CAGCCCCguCUGACGaugucgGCGGCGCu- -3'
miRNA:   3'- aGCuGUUGGGG--GACUGC------UGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 48404 0.7 0.739123
Target:  5'- -gGAgAACCUCCgGACGACGGaGCAc -3'
miRNA:   3'- agCUgUUGGGGGaCUGCUGCCgCGUc -5'
15771 5' -58.4 NC_004065.1 + 52079 0.69 0.748351
Target:  5'- gCGAgAACCCCaggagaaGCGGCGGCGCc- -3'
miRNA:   3'- aGCUgUUGGGGgac----UGCUGCCGCGuc -5'
15771 5' -58.4 NC_004065.1 + 124960 0.69 0.748351
Target:  5'- gCGGCAGCgCCUgcacgaagGGCGGCcagaGGCGCGGg -3'
miRNA:   3'- aGCUGUUGgGGGa-------CUGCUG----CCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 32522 0.69 0.757487
Target:  5'- gUGACGgcGCCCauCCUGAUGACGGCcccgucgcgccgGCGGu -3'
miRNA:   3'- aGCUGU--UGGG--GGACUGCUGCCG------------CGUC- -5'
15771 5' -58.4 NC_004065.1 + 30059 0.69 0.766523
Target:  5'- gCGGCAGCguuaUCgUUGAUGGCGGCGguGg -3'
miRNA:   3'- aGCUGUUG----GGgGACUGCUGCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 154141 0.71 0.672607
Target:  5'- aCGAUcGCCCCgggcggUGGCGGCGGCGgCGGc -3'
miRNA:   3'- aGCUGuUGGGGg-----ACUGCUGCCGC-GUC- -5'
15771 5' -58.4 NC_004065.1 + 114863 0.71 0.672607
Target:  5'- gUCGgggcGCGGCgCCCgacGACGAUGGCGguGa -3'
miRNA:   3'- -AGC----UGUUGgGGGa--CUGCUGCCGCguC- -5'
15771 5' -58.4 NC_004065.1 + 90313 0.71 0.63377
Target:  5'- cCGGCAGCCgcguguucaCCCUGAUGAaggaggUGGCGUAGc -3'
miRNA:   3'- aGCUGUUGG---------GGGACUGCU------GCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 19020 0.76 0.388483
Target:  5'- aUCGACGACUCCgaaggguugGACGACGGCgGCGGu -3'
miRNA:   3'- -AGCUGUUGGGGga-------CUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 30858 0.75 0.446694
Target:  5'- aCGACGACCagCCUGuCGACGGCGgGu -3'
miRNA:   3'- aGCUGUUGGg-GGACuGCUGCCGCgUc -5'
15771 5' -58.4 NC_004065.1 + 57455 0.75 0.455402
Target:  5'- uUCGAC-GCCgUCgUGGCGAUGGCGCGGc -3'
miRNA:   3'- -AGCUGuUGGgGG-ACUGCUGCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 24759 0.75 0.464201
Target:  5'- -gGGCGGCCCCCcGuuGGcCGGCGCGGg -3'
miRNA:   3'- agCUGUUGGGGGaCugCU-GCCGCGUC- -5'
15771 5' -58.4 NC_004065.1 + 24515 0.73 0.518724
Target:  5'- gCGcCGGCCCCaaGAUGGCGGCgGCAGc -3'
miRNA:   3'- aGCuGUUGGGGgaCUGCUGCCG-CGUC- -5'
15771 5' -58.4 NC_004065.1 + 38198 0.73 0.546929
Target:  5'- uUCGGCAucaugACCCCCgugcgGAgGACGG-GCGGg -3'
miRNA:   3'- -AGCUGU-----UGGGGGa----CUgCUGCCgCGUC- -5'
15771 5' -58.4 NC_004065.1 + 59551 0.73 0.566002
Target:  5'- cCGAaGACCCCCcgaagccgaUGGCGACGG-GCAGc -3'
miRNA:   3'- aGCUgUUGGGGG---------ACUGCUGCCgCGUC- -5'
15771 5' -58.4 NC_004065.1 + 49691 0.72 0.575604
Target:  5'- -aGGCGuCCCuCCUGAUGACGGCGg-- -3'
miRNA:   3'- agCUGUuGGG-GGACUGCUGCCGCguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.