miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15772 3' -58.5 NC_004065.1 + 173136 0.66 0.900941
Target:  5'- aGGAUCAUCcgcacgcuggauaccAGG-UCGgaggcccguGGGaGGGCCGUCg -3'
miRNA:   3'- -UCUGGUAG---------------UCCaAGC---------UCC-CCCGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 30862 0.66 0.899716
Target:  5'- cGACCAgccugucgacggCGGGUUCGAGcgcccgcagggcgucGGGGUCG-Ca -3'
miRNA:   3'- uCUGGUa-----------GUCCAAGCUC---------------CCCCGGCaG- -5'
15772 3' -58.5 NC_004065.1 + 110063 0.66 0.898482
Target:  5'- -uACC-UCAGG-UCGGGGcucacGGCCGUCc -3'
miRNA:   3'- ucUGGuAGUCCaAGCUCCc----CCGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 172781 0.66 0.898482
Target:  5'- gAGACCggCGucUUCGAGGGGGUUuUCg -3'
miRNA:   3'- -UCUGGuaGUccAAGCUCCCCCGGcAG- -5'
15772 3' -58.5 NC_004065.1 + 5184 0.66 0.898482
Target:  5'- cAGACCGUCGGGgaaaUCGugaucaAGGGcuacggacagacGGCgGUCg -3'
miRNA:   3'- -UCUGGUAGUCCa---AGC------UCCC------------CCGgCAG- -5'
15772 3' -58.5 NC_004065.1 + 126387 0.66 0.879653
Target:  5'- cGACCGccugcucgcgcagaaUCAGcgcgugguacgacuGUUCGAGcGGGGCCG-Ca -3'
miRNA:   3'- uCUGGU---------------AGUC--------------CAAGCUC-CCCCGGCaG- -5'
15772 3' -58.5 NC_004065.1 + 157086 0.66 0.878972
Target:  5'- uGACCGUUAGGUggacccgacUCGccgccGGGGGcGCCuUCa -3'
miRNA:   3'- uCUGGUAGUCCA---------AGC-----UCCCC-CGGcAG- -5'
15772 3' -58.5 NC_004065.1 + 168025 0.66 0.878972
Target:  5'- cGGGCCGguUCuGuGUUCGcGGGGGCUGc- -3'
miRNA:   3'- -UCUGGU--AGuC-CAAGCuCCCCCGGCag -5'
15772 3' -58.5 NC_004065.1 + 89645 0.67 0.864951
Target:  5'- uGACguUCAGGaaccccuucUUGAGGGGcGUCGUCc -3'
miRNA:   3'- uCUGguAGUCCa--------AGCUCCCC-CGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 200104 0.67 0.84249
Target:  5'- cGGAUCAUCGaGccCGAGGacuucgcgcGGGCCGUCa -3'
miRNA:   3'- -UCUGGUAGUcCaaGCUCC---------CCCGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 170474 0.67 0.829855
Target:  5'- -cGCCAUCGGcUUCGGGGGgucuucgguggaauuGGCgCGUCa -3'
miRNA:   3'- ucUGGUAGUCcAAGCUCCC---------------CCG-GCAG- -5'
15772 3' -58.5 NC_004065.1 + 35076 0.67 0.826629
Target:  5'- cGACCAgCuGGcgaGAcGGGGGCUGUCu -3'
miRNA:   3'- uCUGGUaGuCCaagCU-CCCCCGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 149677 0.68 0.810119
Target:  5'- uGACCGUguccagggucugCAGGUgaaCGccGGGGGGCCG-Cg -3'
miRNA:   3'- uCUGGUA------------GUCCAa--GC--UCCCCCGGCaG- -5'
15772 3' -58.5 NC_004065.1 + 143308 0.68 0.810119
Target:  5'- gGGGCCGgggCAGGaggggaaGAGGGGGCgGg- -3'
miRNA:   3'- -UCUGGUa--GUCCaag----CUCCCCCGgCag -5'
15772 3' -58.5 NC_004065.1 + 61896 0.68 0.810119
Target:  5'- uGACCGUCAucgucGGggUCGGGGGGcGCaucuCGUCc -3'
miRNA:   3'- uCUGGUAGU-----CCa-AGCUCCCC-CG----GCAG- -5'
15772 3' -58.5 NC_004065.1 + 28544 0.68 0.793017
Target:  5'- cGGGCCGUCGGGUcgaccgggaucUCGcGGGGaG-CGUCc -3'
miRNA:   3'- -UCUGGUAGUCCA-----------AGCuCCCC-CgGCAG- -5'
15772 3' -58.5 NC_004065.1 + 34653 0.68 0.793017
Target:  5'- cGGCCGUCAcGGUgUCcAGGaaGGCCGUCg -3'
miRNA:   3'- uCUGGUAGU-CCA-AGcUCCc-CCGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 211669 0.68 0.775382
Target:  5'- cGugCGgaucGUUCGAGGGGgaGCCGUCg -3'
miRNA:   3'- uCugGUagucCAAGCUCCCC--CGGCAG- -5'
15772 3' -58.5 NC_004065.1 + 196619 0.69 0.769997
Target:  5'- cAGGCCuUCAGGUUCGAcGgguucaugauauccaGGGGCCa-- -3'
miRNA:   3'- -UCUGGuAGUCCAAGCU-C---------------CCCCGGcag -5'
15772 3' -58.5 NC_004065.1 + 33659 0.7 0.681445
Target:  5'- cGACCGUCcGGcgcgCGGGGaGGGCCGc- -3'
miRNA:   3'- uCUGGUAGuCCaa--GCUCC-CCCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.