miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15772 5' -56.7 NC_004065.1 + 93500 0.66 0.944092
Target:  5'- cAGGAccaGCaCCCCGgAcCCGCCUGGCu -3'
miRNA:   3'- cUCUUca-UGaGGGGCgU-GGUGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 194429 0.66 0.944092
Target:  5'- -cGGAGUuCUCCCCGgGC-GCCUcGGUc -3'
miRNA:   3'- cuCUUCAuGAGGGGCgUGgUGGA-CCG- -5'
15772 5' -56.7 NC_004065.1 + 79669 0.66 0.942775
Target:  5'- cGGGAGGUGCcgaacgugcccgacaUCCGCAuCCACC-GGCu -3'
miRNA:   3'- -CUCUUCAUGag-------------GGGCGU-GGUGGaCCG- -5'
15772 5' -56.7 NC_004065.1 + 179925 0.66 0.939622
Target:  5'- -uGAAG-ACUCag-GUACCACCUGGUu -3'
miRNA:   3'- cuCUUCaUGAGgggCGUGGUGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 203602 0.66 0.939622
Target:  5'- ----uGUGCUCUcggaggCCGcCGCCGCCgUGGCg -3'
miRNA:   3'- cucuuCAUGAGG------GGC-GUGGUGG-ACCG- -5'
15772 5' -56.7 NC_004065.1 + 114017 0.66 0.934929
Target:  5'- aGAGAGcUGC-CCCCGCGgCGCaCgucGGCg -3'
miRNA:   3'- -CUCUUcAUGaGGGGCGUgGUG-Ga--CCG- -5'
15772 5' -56.7 NC_004065.1 + 81144 0.66 0.934929
Target:  5'- -cGAGGUuucgucccccucGCcCCCCGcCGCCGCCUccucgaucgcGGCg -3'
miRNA:   3'- cuCUUCA------------UGaGGGGC-GUGGUGGA----------CCG- -5'
15772 5' -56.7 NC_004065.1 + 151142 0.66 0.930011
Target:  5'- aGGuGGUGCacgcgCUCCGCGaCACCUGGUc -3'
miRNA:   3'- cUCuUCAUGa----GGGGCGUgGUGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 161518 0.66 0.93001
Target:  5'- cGGGAGaUGCgUCCgCCGCcUCACCUGaGCc -3'
miRNA:   3'- cUCUUC-AUG-AGG-GGCGuGGUGGAC-CG- -5'
15772 5' -56.7 NC_004065.1 + 173295 0.66 0.929506
Target:  5'- gGAGGAGagacagcUGCUgCCgCCGcCGCCGCCgcugcGGCg -3'
miRNA:   3'- -CUCUUC-------AUGA-GG-GGC-GUGGUGGa----CCG- -5'
15772 5' -56.7 NC_004065.1 + 130145 0.66 0.925391
Target:  5'- cGAGAGGaaggacgaggccgucGCUauccgcgaCCCCgGCGCCAUCUGGUg -3'
miRNA:   3'- -CUCUUCa--------------UGA--------GGGG-CGUGGUGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 77197 0.66 0.924866
Target:  5'- --cAAGUGCgcggcggcgCCCCGCACgGCgaUGGCc -3'
miRNA:   3'- cucUUCAUGa--------GGGGCGUGgUGg-ACCG- -5'
15772 5' -56.7 NC_004065.1 + 52175 0.66 0.924866
Target:  5'- cGAGcAGUucugACUgUCC-CGCCGCCUGGUu -3'
miRNA:   3'- -CUCuUCA----UGAgGGGcGUGGUGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 33182 0.67 0.919497
Target:  5'- cGAGAcgcuGUACcgUCgCCCGCACCuGCCgcaGGUg -3'
miRNA:   3'- -CUCUu---CAUG--AG-GGGCGUGG-UGGa--CCG- -5'
15772 5' -56.7 NC_004065.1 + 146267 0.67 0.913902
Target:  5'- ----uGUGCUUUCCGCGCgAguuCCUGGCc -3'
miRNA:   3'- cucuuCAUGAGGGGCGUGgU---GGACCG- -5'
15772 5' -56.7 NC_004065.1 + 61370 0.67 0.913902
Target:  5'- uGGggGU-CUCCUCGCGUC-CCUGGa -3'
miRNA:   3'- cUCuuCAuGAGGGGCGUGGuGGACCg -5'
15772 5' -56.7 NC_004065.1 + 112813 0.67 0.908083
Target:  5'- -cGAcGUcCgUCCCCGCcaucACCuGCCUGGCg -3'
miRNA:   3'- cuCUuCAuG-AGGGGCG----UGG-UGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 93748 0.67 0.908083
Target:  5'- ------gAUUCCUCGCACCccGCUUGGCu -3'
miRNA:   3'- cucuucaUGAGGGGCGUGG--UGGACCG- -5'
15772 5' -56.7 NC_004065.1 + 195242 0.67 0.908083
Target:  5'- cGAGGuAGUGCaCCaCCGCGgCCGCgauCUGGCc -3'
miRNA:   3'- -CUCU-UCAUGaGG-GGCGU-GGUG---GACCG- -5'
15772 5' -56.7 NC_004065.1 + 148266 0.67 0.902042
Target:  5'- uGAGcuGGUACUCgCCCGaguuCAUCACC-GGCu -3'
miRNA:   3'- -CUCu-UCAUGAG-GGGC----GUGGUGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.